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Workshops and courses
Galaxy Training Academy 2025
12 - 16 May 2025
Online
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Workshops and courses
Introduction to metabolomics analysis
27 April - 1 May 2026
United Kingdom
Face-to-face
MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Workshops and courses
Introduction to metabolomics analysis
20 - 23 May 2025
United Kingdom
Face-to-face
Metabolomics Mass spectrometry data Metabolic network modelling MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification
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galaxyproject/training-material
Galaxy Snakemake General Data management FAIR data Reproducibility Python R Unix/Linux Version control …
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Tutorial
Development in Galaxy - Galaxy Webhooks
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Slides
Galaxy Server administration - Upgrading Galaxy
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Tutorial
Introduction to Galaxy Analyses - Galaxy 101
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Tutorial
Galaxy Server administration - Galaxy Database schema
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Slides
Galaxy Server administration - Docker and Galaxy
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Slides
Development in Galaxy - Galaxy Interactive Tours
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Slides
Development in Galaxy - Galaxy Interactive Environments
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Slides
Development in Galaxy - Galaxy Code Architecture
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Introduction to Galaxy Analyses - Introduction to Galaxy
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Slides
Introduction to Galaxy Analyses - Options for using Galaxy
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Slides
Development in Galaxy - Tool Shed: sharing Galaxy tools
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GTN Smörgåsbord 2: Tapas - A Very Short Introduction to Galaxy
Automation, Galaxy workflows, command line Galaxy Galaxy 101 Galaxy, Accelerating Research, data sharing Galaxy, Case Studies, SARS-COV-2 data Galaxy, Customising, customise, ObservableHQ Galaxy, Mutation calling, viral genome reconstruction, lineage assignment, clade assignment, SARS-CoV-2 sequencing data Galaxy, NGS Galaxy, Pandemics Research, Mass Spectrometry, MS Galaxy, Quality control, QC …
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Slides
Galaxy Server administration - Advanced customisation of a Galaxy instance
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Tutorial
Introduction to Galaxy Analyses - Introduction to Genomics and Galaxy
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Tutorial
Galaxy Server administration - Connecting Galaxy to a compute cluster
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Galaxy Server administration - Galaxy from an administrator point of view
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Development in Galaxy - Galaxy from a developer point of view
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Slides
Development in Galaxy - BioBlend module, a Python library to use Galaxy API
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Contributing to the Galaxy Training Material - Overview of the Galaxy Training Material
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Tutorial
Contributing to the Galaxy Training Material - Running the Galaxy Training material website locally
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Tutorial
Contributing to the Galaxy Training Material - Creating a new tutorial - Creating Interactive Galaxy Tours
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e-learning
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
•• intermediateImaging -
slides
Galaxy Troubleshooting
• beginnerGalaxy Server administration -
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Galaxy Monitoring
• beginnerGalaxy Server administration -
slides
Galaxy Webhooks
• beginnerSoftware engineering Development in Galaxy -
e-learning
Upgrading Galaxy
• beginnerGalaxy Server administration ansible -
e-learning
Galaxy Webhooks
• beginnerSoftware engineering Development in Galaxy -
e-learning
Debugging Galaxy
• beginnerSoftware engineering Development in Galaxy -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses
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Galaxy
Introduction to Galaxy
Galaxy workflows
Introduction to GenomeSpace -
ELIXIR Biodiversity Community
This is a curated collection of biodiversity-relevant training resources (e.g. Galaxy for Ecology initiative), including materials (aiming for FAIR and open materials) and trainings published and made accessible through TeSS, GTN, etc. and shared through the networks being mapped by activities...
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Galaxy Project
There are many approaches to learning how to use Galaxy. The most popular is probably to just dive in and use it. Galaxy is simple enough to use that you can do many analyses just by exploring the interface. However, you may miss much of the power this way.
1 event (535 past events)Galaxy Project https://galaxyproject.org/events https://tess.elixir-europe.org/content_providers/galaxy-project There are many approaches to learning how to use Galaxy. The most popular is probably to just dive in and use it. Galaxy is simple enough to use that you can do many analyses just by exploring the interface. However, you may miss much of the power this way. /system/content_providers/images/000/000/094/original/galaxyproject.png?1530281075 -
GTN
The GTN is a global community of teachers, trainers, developers, administrators, and learners based around the Galaxy Platform!
For Learners
Our community provides over 370 high quality, peer-reviewed training materials...773 training materials34 events (18 past events)GTN https://training.galaxyproject.org/ https://tess.elixir-europe.org/content_providers/galaxy-training The GTN is a global community of teachers, trainers, developers, administrators, and learners based around the [Galaxy Platform](https://galaxyproject.org)! **For Learners** Our community provides over [370 high quality](https://training.galaxyproject.org/), peer-reviewed training materials from a global community of [330 instructors](https://training.galaxyproject.org/training-material/hall-of-fame/), with a focus on reproducibility and [FAIRness](https://training.galaxyproject.org/training-material/faqs/gtn/fair_training.html). **Not Just Galaxy** We've expanded our content to include data science, software development, and even alternative <abbr title="scientific workflow management systems">SciWMSs</abbr> like snakemake! **For Teachers** All of our materials are [FAIR](https://training.galaxyproject.org/training-material/faqs/gtn/fair_training.html), and we put a lot of effort into the platform's [accessibility for all audiences.](https://training.galaxyproject.org/accessibility.html). If you're interested in [contributing your own materials](https://training.galaxyproject.org/training-material/topics/contributing/) we'd love to help you share them with the world! Most of our materials are licensed CC-BY-SA so you're welcome to use these materials for your own course and classes! If you want to use a specific version of a material you may be interested in accessing them via [our archive](https://training.galaxyproject.org/archive/). **For Administrators** If you're a budding Galaxy Administrator, or an experienced one looking to catch up, the GTN is the source for all of those materials. We also work to make it easy for you as an admin to support tutorials on your infrastructure, you'll find a list of tools and their installation instructions at the bottom of every tutorial. /system/content_providers/images/000/000/078/original/GTN-400px.png?1718821926 -
ELIXIR Norway
12 training materials0 events (27 past events)ELIXIR Norway http://elixir-norway.org https://tess.elixir-europe.org/content_providers/elixir-norway /system/content_providers/images/000/000/087/original/elixir_norway_white_background.png?1530281111 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557