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PhenoMeNal: accessing metabolomics workflows in Galaxy
• beginnerMetabolomics Chemical biology Galaxy -
slides
Slides for 'Galaxy workflows in Dockstore' tutorial
galaxy-interface
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slides
Slides for 'Getting data into Galaxy' tutorial
galaxy-interface
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slides
Slides for 'Submitting SARS-CoV-2 sequences to ENA' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Understanding Galaxy history system' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Searching Your History' tutorial
• beginnergalaxy-interface -
hands-on tutorial
Hands-on for 'Name tags for following complex histories' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Use Jupyter notebooks in Galaxy' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'InterMine integration with Galaxy' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Group tags for complex experimental designs' tutorial
galaxy-interface
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hands-on tutorial
Hands-on for 'Downloading and Deleting Data in Galaxy' tutorial
• beginnergalaxy-interface -
hands-on tutorial
Hands-on for 'Using Workflow Parameters' tutorial
•• intermediategalaxy-interface workflows -
hands-on tutorial
Hands-on for 'Using dataset collections' tutorial
•• intermediategalaxy-interface collections -
hands-on tutorial
Hands-on for 'Creating, Editing and Importing Galaxy Workflows' tutorial
•• intermediategalaxy-interface workflows -
hands-on tutorial
Hands-on for 'Submitting sequence data to ENA' tutorial
•• intermediategalaxy-interface covid19 -
hands-on tutorial
Hands-on for 'Extracting Workflows from Histories' tutorial
galaxy-interface workflows
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hands-on tutorial
Hands-on for 'Workflow Reports' tutorial
•• intermediategalaxy-interface workflows -
slides
Slides for 'Introduction to SRA Aligned Read Format and Cloud Metadata for SARS-CoV-2' tutorial
galaxy-interface ncbi covid19
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hands-on tutorial
Hands-on for 'Rule Based Uploader' tutorial
•• intermediategalaxy-interface collections tags -
hands-on tutorial
Hands-on for 'RStudio in Galaxy' tutorial
galaxy-interface interactive-tools
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hands-on tutorial
Hands-on for 'SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis' tutorial
galaxy-interface ncbi covid19
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hands-on tutorial
Hands-on for 'Rule Based Uploader: Advanced' tutorial
••• advancedgalaxy-interface collections tags -
hands-on tutorial
Hands-on for 'JupyterLab in Galaxy' tutorial
galaxy-interface interactive-tools
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WORKSHOP: Online data analysis for biologists
Bioinformatics Analysis Workflows Galaxy Australia
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WEBINAR: Here's one we prepared earlier: (re)creating bioinformatics methods and workflows with Galaxy Australia
Bioinformatics Workflows FAIR Galaxy Australia
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WORKSHOP: Translating workflows into Nextflow with Janis
Bioinformatics Workflows Nextflow CWL Galaxy
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WEBINAR: Managing hands-on data analysis training with Galaxy
Bioinformatics Galaxy Training Training infrastructure
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course materials, Training materials, Slides
ELIXIR TtR course: Basic genomics using advanced analysis tools
• beginnerGenomics Galaxy training eLearning EeLP -
course materials, Training materials, Slides
Galaxy Proteomics workshop Prague 2018
Proteomics Galaxy training proteomics eLearning EeLP
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e-learning
Workflows: Combining tools for data analysis
Workflows Galaxy NextFlow SnakeMake EOSC-Life
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Galaxy Project
There are many approaches to learning how to use Galaxy. The most popular is probably to just dive in and use it. Galaxy is simple enough to use that you can do many analyses just by exploring the interface. However, you may miss much of the power this way.
0 events (536 past events)Galaxy Project https://galaxyproject.org/events https://tess.elixir-europe.org/content_providers/galaxy-project There are many approaches to learning how to use Galaxy. The most popular is probably to just dive in and use it. Galaxy is simple enough to use that you can do many analyses just by exploring the interface. However, you may miss much of the power this way. /system/content_providers/images/000/000/094/original/galaxyproject.png?1530281075 -
Galaxy Training
The Galaxy Training Network is a global community of teachers, trainers, developers, administrators, and learners based around the Galaxy Platform!
For Learners
Our community provides over 370 high quality, peer-reviewed...549 training materials0 events (7 past events)Galaxy Training https://training.galaxyproject.org/ https://tess.elixir-europe.org/content_providers/galaxy-training The Galaxy Training Network is a global community of teachers, trainers, developers, administrators, and learners based around the [Galaxy Platform](https://galaxyproject.org)! **For Learners** Our community provides over [370 high quality](https://training.galaxyproject.org/), peer-reviewed training materials from a global community of [330 instructors](https://training.galaxyproject.org/training-material/hall-of-fame/), with a focus on reproducibility and [FAIRness](https://training.galaxyproject.org/training-material/faqs/gtn/fair_training.html). **Not Just Galaxy** We've expanded our content to include data science, software development, and even alternative <abbr title="scientific workflow management systems">SciWMSs</abbr> like snakemake! **For Teachers** All of our materials are [FAIR](https://training.galaxyproject.org/training-material/faqs/gtn/fair_training.html), and we put a lot of effort into the platform's [accessibility for all audiences.](https://training.galaxyproject.org/accessibility.html). If you're interested in [contributing your own materials](https://training.galaxyproject.org/training-material/topics/contributing/) we'd love to help you share them with the world! Most of our materials are licensed CC-BY-SA so you're welcome to use these materials for your own course and classes! If you want to use a specific version of a material you may be interested in accessing them via [our archive](https://training.galaxyproject.org/archive/). **For Administrators** If you're a budding Galaxy Administrator, or an experienced one looking to catch up, the GTN is the source for all of those materials. We also work to make it easy for you as an admin to support tutorials on your infrastructure, you'll find a list of tools and their installation instructions at the bottom of every tutorial. /system/content_providers/images/000/000/078/original/GTNLogo1000.png?1501677361 -
ELIXIR Norway
3 training materials2 events (15 past events)ELIXIR Norway http://elixir-norway.org https://tess.elixir-europe.org/content_providers/elixir-norway /system/content_providers/images/000/000/087/original/elixir_norway_white_background.png?1530281111 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557