Search results
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Quality Control in Sequencing Experiments
Quality affairs Babraham Institute
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Recorded webinar
Ethics/ELSI considerations - From FAIR to fair data sharing
Data governance
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Recorded webinar
Mastering data management: Go FAIR, Go Open, Go Smart — EMO BON and TREC showcases
Data management Marine biology Bioimaging
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Implementing GDPR in a Biomedical Research Institute
•• intermediateData governance Data management GDPR data protection sensitive data -
Video, Webinar, Slides
Data Stewardship Wizard Workshop (Feb 2020)
• beginnerData governance Data management Data management plan data stewardship FAIR data management software tools -
Video, Slides, Webinar
A Gentle Introduction to DSW for Convergers
• beginnerData management Data governance Data managment plan data stewardship data management software tools -
Presentation
Create and Handle a Data Management Plan
Data management Data governance Data handling Data deposition
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GOBLET Talk at INCoB 2014
Goblet
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GOBLET Training portal
Goblet
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A Critical Guide to Unix
Command line Introduction bioinformatics Introduction unix Unix commands Unix operating system
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A Critical Guide to BLAST
Introduction bioinformatics Introduction blast Sequence database searching Sequence similarity searching
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A Critical Guide to UniProtKB
Database management Introduction bioinformatics Introduction uniprot Protein sequence databases Uniprot knowledgebase
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A Critical Guide to the UniProtKB Flat-file Format
Database management Flat file databases Flat files Introduction bioinformatics Uniprotkb flat file format
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A Critical Guide to InterPro
Database management Introduction bioinformatics Introduction interpro Protein family classification Protein family databases Protein family hierarchies Protein function annotation Protein sequence analysis
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A Critical Guide to the PDB
Database management Introduction bioinformatics Introduction pdb Protein structure analysis Protein structure databases Protein structures
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Using Bioinformatics to Understand Genetic Diseases: A Practical Guide
Basic bioinformatics Bioinformatics schools Gene finding Genetic mutation Insulin structure Sequence alignment Sequence database searching Training material
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A Critical Guide to the neXtProt knowledgebase: querying using SPARQL
Database management Human protein database Introduction bioinformatics Introduction nextprot Nextprot data model Rdf triples Semantic triples Sparql queries Sparql syntax Training material
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Bioinformatics - the Power of Computers in Biology: A Practical Guide
Sequence analysis Basic bioinformatics Basic linux commands Bioinformatics schools Gene loss Genetic mutation Raspberry pi computers Sequence database searching Training materials
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Course design: Considerations for trainers – a Professional Guide
Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material
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Concepts, historical milestones & the central place of bioinformatics in modern biology: a European perspective
Bioinformatics history Biomolecular databases Biomolecular sequences European perspective
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Flow Cytometry 2013 Module 1 - Introduction to Flow Cytometry Analysis in R
Introduction flow cytometry Review r
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Flow Cytometry 2013 Module 2 - Exploring FCM data in R
Fcs files Plotting data R
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Flow Cytometry 2013 Module 3 - Preprocessing and Quality Assurance of FCM Data
Flow cytometry data Preprocessing Quality assurance
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Flow Cytometry 2013 Module 5 - 1D Dynamic gating
1d dynamic gating Flow cytometry data
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Flow Cytometry 2013 Module 6 - Clustering and Additional FCM Tools
Biomarker discovery Flow cytometry data Flowcap
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Flow Cytometry 2013 Module 4 - 1D Static gating
1d static gating Flow cytometry data
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RNA-seq analysis
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Introduction to Unix
Bioinformatics Programming Unixlinux
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Parsing data records using Python programming
Bioinformatics Programming Python Python biologists Record parsing
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Bioinformatics for MS analysis
Bioinformatics Identification Mass spectrometry
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ELIXIR Toxicology Community
Toxicology has been an active research field for many decades, with academic, industrial and government involvement. Modern omics and computational approaches are changing the field, from merely disease-specific observational models into target-specific predictive models.
Traditionally,...
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Byte-sized RSE series
Byte-sized RSE (Research Software Engineering) is a series of short interactive tutorial sessions where you can learn key skills to improve how you write and manage your research software in just 1 hour. They provide opportunities to gain hands-on experience and to ask questions, in an informal...
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PINK project
Safe-and-Sustainable-by-Design (SSbD) advanced materials and chemicals (AdMas&Chems) are a central requirement for reaching the ambitious goal of making Europe the first digitally-enabled circular, climate-neutral and sustainable economy. Such new AdMas&Chems need to provide the high...
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GOBLET
GOBLET, the Global Organisation for Bioinformatics Learning, Education and Training, is a legally registered foundation providing a global, sustainable support and networking structure for bioinformatics educators/trainers and students/trainees.
110 training materials0 events (1 past event)GOBLET http://www.mygoblet.org https://tess.elixir-europe.org/content_providers/goblet GOBLET, the Global Organisation for Bioinformatics Learning, Education and Training, is a legally registered foundation providing a global, sustainable support and networking structure for bioinformatics educators/trainers and students/trainees. /system/content_providers/images/000/000/004/original/logo_goblet_trans.png?1469458222 -
RiskGONE
0 events (1 past event)RiskGONE https://riskgone.eu/ https://tess.elixir-europe.org/content_providers/riskgone -
ELIXIR AAI
The ELIXIR Authentication and Authorization Infrastructure (AAI) lets you sign in to a range of services with the same account. You can use your university or institute account, or an account with a with a company like Google, Apple or LinkedIn.
3 training materialsELIXIR AAI https://elixir-europe.org/platforms/compute/aai https://tess.elixir-europe.org/content_providers/elixir-aai The ELIXIR Authentication and Authorization Infrastructure (AAI) lets you sign in to a range of services with the same account. You can use your university or institute account, or an account with a with a company like Google, Apple or LinkedIn. -
Open Science MOOC
Open Science MOOC is a mission-driven project to help make ‘Open’ the default setting for all global research. We want to help create a welcoming and supporting community, with good tools, teachers, and role-models, and built upon a solid values-based foundation of freedom and equitable access to...
1 training materialOpen Science MOOC https://opensciencemooc.eu/ https://tess.elixir-europe.org/content_providers/open-science-mooc Open Science MOOC is a mission-driven project to help make ‘Open’ the default setting for all global research. We want to help create a welcoming and supporting community, with good tools, teachers, and role-models, and built upon a solid values-based foundation of freedom and equitable access to research. /system/content_providers/images/000/000/101/original/31343113?1536821365 -
Library Carpentry
Library Carpentry develops lessons and teaches workshops for and with people working in library- and information-related roles. Our goal is to create an on-ramp to empower this community to use software and data in their own work as well as be advocates for and train others in efficient,...
0 events (114 past events)Library Carpentry https://librarycarpentry.org/ https://tess.elixir-europe.org/content_providers/library-carpentry Library Carpentry develops lessons and teaches workshops for and with people working in library- and information-related roles. Our goal is to create an on-ramp to empower this community to use software and data in their own work as well as be advocates for and train others in efficient, effective and reproducible data and software practices. /system/content_providers/images/000/000/113/original/Screenshot_2019-06-12_at_09.33.06.png?1560327765 -
The Center for Professional Innovation and Education
CfPIE is a leading provider of quality training for the life sciences industry. For nearly 15 years, the world’s biggest brands and companies in the pharmaceutical, biotechnology, medical device, and skin/cosmetics markets have relied on our on-site and classroom courses.
We are dedicated to...
0 events (7 past events)The Center for Professional Innovation and Education https://www.cfpie.com https://tess.elixir-europe.org/content_providers/the-center-for-professional-education-and-innovation CfPIE is a leading provider of quality training for the life sciences industry. For nearly 15 years, the world’s biggest brands and companies in the pharmaceutical, biotechnology, medical device, and skin/cosmetics markets have relied on our on-site and classroom courses. We are dedicated to helping companies improve their performance in various business functions, including regulatory, product development, go-to-market, compliance, and more. We are also committed to helping individuals at these companies grow their careers and improve their knowledge bases. /system/content_providers/images/000/000/079/original/CfPIE_Logo_230x70.jpg?1501710748 -
Bioinformatics and Biomathematics Training Hub
The Bioinformatics and Biomathematics Training Hub (BBTH) is a BBSRC-funded collaborative project to coordinate the development and sharing of training materials and expertise across the UK’s National Institutes of Bioscience (NIB — http://www.nib.ac.uk/) for the increasingly important areas of...
62 training materialsBioinformatics and Biomathematics Training Hub http://www.earlham.ac.uk/bbsrc-bioinformatics-and-biomathematics-training-hub https://tess.elixir-europe.org/content_providers/bioinformatics-and-biomathematics-training-hub The Bioinformatics and Biomathematics Training Hub (BBTH) is a BBSRC-funded collaborative project to coordinate the development and sharing of training materials and expertise across the UK’s National Institutes of Bioscience (NIB — http://www.nib.ac.uk/) for the increasingly important areas of bioinformatics and biomathematics. Guided by our NIB partners, researcher surveys, and interactions with interested bodies such as Elixir-UK, we will work to ensure that best use is made of existing assets and capabilities, that best practice is shared across the NIB, and that redundant effort is minimised going forwards. /system/content_providers/images/000/000/061/original/BBTH_logo.png?1480508618 -
Thermo Fisher Scientific
Thermo Fisher Scientific is the world leader in serving science, a company with approximately 50,000 employees in 50 countries, creating products and services that enable our customers to make the world healthier, cleaner and safer.
Our EMEA team runs workshops and a bioinformatics career...
0 events (5 past events)Thermo Fisher Scientific https://learn.thermofisher.com/europe/courses/ https://tess.elixir-europe.org/content_providers/thermo-fisher-scientific Thermo Fisher Scientific is the world leader in serving science, a company with approximately 50,000 employees in 50 countries, creating products and services that enable our customers to make the world healthier, cleaner and safer. Our EMEA team runs workshops and a bioinformatics career professional development programme across Europe. Our bioinformatics training programme is not limited to Ion Torrent™ users, but anybody dealing with NGS data analysis. Molecular biologists and bench scientists with an interest to go beyond the graphic interface will enjoy our courses. We offer you a chance to explore the open source world associated to bioinformatics with our experts. /system/content_providers/images/000/000/052/original/Thermo_logo.jpg?1469615410 -
CSC - IT Center for Science
CSC - IT Center for Science Ltd. is a non-profit, state-owned company administered by the Finnish Ministry of Education and Culture. CSC maintains and develops the state-owned centralised IT infrastructure and uses it to provide nationwide IT services for research, libraries, archives, museums...
14 training materials4 events (129 past events)CSC - IT Center for Science https://www.csc.fi https://tess.elixir-europe.org/content_providers/csc-it-center-for-science CSC - IT Center for Science Ltd. is a non-profit, state-owned company administered by the Finnish Ministry of Education and Culture. CSC maintains and develops the state-owned centralised IT infrastructure and uses it to provide nationwide IT services for research, libraries, archives, museums and culture as well as information, education and research management. CSC has the task of promoting the operational framework of Finnish research, education, culture and administration. As a non-profit, government organisation, it is our duty to foster exemplary transparency, honesty and responsibility. Trust is the foundation of CSC's success. Customers, suppliers, owners and personnel alike must feel certain that we will fulfil our commitments and promises in an ethically sustainable manner. CSC has offices in Espoo's Keilaniemi and in the Renforsin Ranta business park in Kajaani. /system/content_providers/images/000/000/016/original/c65ddc42-63fc-44da-8d0f-9f88c54779d7?1469458451 -
ELIXIR Hungary
The Hungarian ELIXIR Node will include twelve different Hungarian universities and research institutes. The participating institutes represent five major scientific focus:
- Human genomics
- Proteomics
- Agricultural genomics
- Veterinary sciences and Ecology.
The Node has not established a...
0 events (2 past events)ELIXIR Hungary http://elixir-hungary.org/ https://tess.elixir-europe.org/content_providers/elixir-hungary The Hungarian ELIXIR Node will include twelve different Hungarian universities and research institutes. The participating institutes represent five major scientific focus: * Human genomics * Proteomics * Agricultural genomics * Veterinary sciences and Ecology. The Node has not established a Service Delivery Plan yet, but it can be anticipated that: * Protein databases (e.g. IUPred, ANCHOR, UniTmp) * Biomarker assesment portals (e.g. G-2-O, Kaplan-Meier Plotter) * Data depositories (e.g. Hungarian Oncogenome Portal) and * Virtual research environments (e.g. Kooplex) will be part of it. Joining ELIXIR, Hungary has the opportunity to strengthen collaboration among its diverse and scattered bioinformatics community. With the coordination of the resources at national level, the aforementioned services and tools will be more visible to the international research community. This goes hand in hand with the development of up to date bioinformatics courses in the education and training field. /system/content_providers/images/000/000/107/original/elixir-hungary.png?1542963208 -
PINK project
Safe-and-Sustainable-by-Design (SSbD) advanced materials and chemicals (AdMas&Chems) are a central requirement for reaching the ambitious goal of making Europe the first digitally-enabled circular, climate-neutral and sustainable economy. Such new AdMas&Chems need to provide the high...
PINK project https://pink-project.eu https://tess.elixir-europe.org/content_providers/pink-project Safe-and-Sustainable-by-Design (SSbD) advanced materials and chemicals (AdMas&Chems) are a central requirement for reaching the ambitious goal of making Europe the first digitally-enabled circular, climate-neutral and sustainable economy. Such new AdMas&Chems need to provide the high functionality required for their advanced applications, whilst simultaneously exhibiting improved safety and sustainability performances that take into account the complete value chain and life cycle, as outlined in the SSbD framework proposed by the EU Joint Research Centre and adopted in the Commission Recommendation of 8 Dec. 2022. To facilitate adoption by industry and, by doing so, foster the twin green and digital transition of Europe’s economy, PINK’s overarching aim is to produce innovative modelling software and integrated workflows for the development of AdMas&Chems, which are combined into an industry-ready open innovation platform, the PINK In Silico Hub (PINKISH). /system/content_providers/images/000/000/777/original/pink-logo-orange-colorB-500.png?1719919427 -
UCLouvain Bioinformatics Platform
The platform's goak is to collaborate throughput the scientific community at the UCLouvain and offer technical and methodological bioinformatics support, including, among others:
support the bioinformatics aspects of grant proposals and experimental designs
high throughput omics data analysis...1 training material0 events (2 past events)UCLouvain Bioinformatics Platform https://uclouvain.be/en/research/bioinfo https://tess.elixir-europe.org/content_providers/uclouvain-bioinformatics-platform The platform's goak is to collaborate throughput the scientific community at the UCLouvain and offer technical and methodological bioinformatics support, including, among others: support the bioinformatics aspects of grant proposals and experimental designs high throughput omics data analysis such as genomics, epigenetics and transcriptomics (RNASeq or microarrays) or mass spectrometry based proteomics and metabolomics help in utilisation of public databases (TCGA, Gtex, CCLE, ENCODE, ...) development of dedicated algorithms and software. The platform also organises workshops in data analysis and bioinformatics to introduce particpants to widely used languages such as R, and get them started in the analysis of their own omics data. For additional information and any collaboration requests, please contact us by email at contact-cbio@uclouvain.be describing your needs, including, if data is already available, the underlying technology and experimental design. Members Prof Laurent Gatto Mr Theo Killian Dr Axelle Loriot Contact: contact-cbio@uclouvain.be CBIO - de Duve Institute - UCLouvain Avenue Hippocrate, 75 - bte B1.74.10 1200 Brussels, Belgium
