Lecture on FlowCAP (Flow Cytometry: Critical Assessment of Population Identification Methods) project

    K-means explained

    flowMeans: smart k-means for FCM data

    flowClust3.0, SPADE, flowBin, flowFP, SamSPECTRAL clustering

    Biomarker discovery: flowType and RchyOptimyx, advanced tools used to explore novel phenotypes and find ones which correlate with a clinical diagnosis

    More R: Bioconductor.org, an open source software project full of bioinformatics packages created for R, including sample work flows

    GenePattern.org: web-interface for running analysis modules such as sample deidentication, extracting specic keywords, quality control, normalization, clustering, classification

    FlowRepository.org: online FCM data repository to share public or private data sets with collaborators while providing detailed descriptions of the experiment set up and each FCS file