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Video
RDMbites | Sequencing Data QC: FastQC metrics
Sequencing data FastQC
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Video
RDMbites | Sequencing data QC: trimming
sequencing data FastQC
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Video
RDMbites: Sequencing data
•• intermediatetranscriptomics FASTQ FastQC Sequencing -
Video
RDMbites | Sequencing Data QC: causes and consequences
Sequencing FastQC QC data
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Tutorial
Sequence analysis - Quality Control
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Tutorial
ChIP-Seq data analysis - Identification of the binding sites of the Estrogen receptor
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slides
Quality Control
• beginnerSequence analysis -
Tutorial
ChIP-Seq data analysis - Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
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e-learning
Identification of the binding sites of the Estrogen receptor
• beginnerEpigenomics ChIP-seq Epigenetics work-in-progress -
hands-on tutorial
Hands-on for 'Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition' tutorial
• beginnerMetagenomics metagenomics Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa -
e-learning
Quality Control
• beginnerSequence analysis -
e-learning
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
• beginnerEpigenomics ChIP-seq Epigenetics -
course materials, Video
Community analysis of amplicon sequencing data (16S rRNA)
• beginner -
Detecting differentially expressed genes with RNA-seq 11.9.2019
RNA-Seq
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e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
course materials, Video
RNA-seq data analysis
• beginnerRNA-Seq -
e-learning
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• beginnerSequence analysis covid19 gmod jbrowse1 -
course materials, Video
Single cell RNA-seq data analysis with Chipster
• beginnerRNA-Seq RNA-Seq Single Cell technologies scRNA-seq -
slides
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
e-learning
A short introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses español -
slides
A Short Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
e-learning
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
e-learning
Calling very rare variants
• beginnerGenetic variation Variant Analysis -
e-learning
Understanding Barcodes
• beginnerTranscriptomics Single Cell -
slides
Introduction to CRISPR screen analysis
• beginnerGenome Annotation -
e-learning
CRISPR screen analysis
• beginnerCRISPR Genome Annotation cell line essential genes genome editing -
e-learning
Metabarcoding/eDNA through Obitools
• beginnerEcology Community composition EBV class EBV dataset EBV workflow Genetic composition EBV class Metabarcoding eDNA -
e-learning
Identification of the micro-organisms in a beer using Nanopore sequencing
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
e-learning
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• beginner10x Single Cell epigenetics -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
