ChIP-Seq data analysis - Identification of the binding sites of the Estrogen receptor

ChIP-sequencing is a method used to analyze protein interactions with DNA.

Questions of the tutorial:

  • How is raw ChIP-seq data processed and analyzed?
  • What are the binding sites of the Estrogen receptor?

Objectives of the tutorial:

  • Inspect read quality with FastQC
  • Map reads with Bowtie2
  • Assess the quality of an ChIP-seq experiments
  • Extract coverage files
  • Call enriched regions or peaks

Resource type: Tutorial

Authors: friedue, erxleben, bebatut, vivekbhr, fidelram

Activity log