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e-learning
Learning about one gene across biological resources and formats
• beginnerSoftware engineering Foundations of Data Science -
A Critical Guide to the UniProtKB Flat-file Format
Database management Flat file databases Flat files Introduction bioinformatics Uniprotkb flat file format
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Recorded webinar
Towards open and standardised imaging data: an introduction to Bio-Formats, OME-TIFF, and OME-Zarr
Data curation and archival
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slides
Bioinformatics Data Types and Databases
• beginnerSoftware engineering Foundations of Data Science -
e-learning
Using BioImage.IO models for image analysis in Galaxy
• beginnerImaging AI bioimaging -
WEBINAR: Effective, inclusive, and scalable training in the life sciences, clinical education and beyond
Short-format training Clinical education Continuing education Professional development Training Lifelong learning Pedagogy
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Presentation
Show Case: Data Liberation and Reuse - Atlas of Brazilian Snakes
•• intermediateFAIR data Bioinformatics Data visualisation Biodiversity Data mining Business Inteligence Herpetology FAIR Data, Workflows, and Research Online Repository -
Introduction to COPASI
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melbournebioinformatics/MelBioInf_docs
Data management Genomics RNA-Seq Transcriptomics General Unix/Linux Version control RNA-seq
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slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
WORKSHOP: Working with genomics sequences and features in R with Bioconductor
R software Bioconductor Bioinformatics Analysis Genomics Sequence analysis
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Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling … -
Data-brokering script
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Tutorial, Documentation
BioSimulators tutorial and help
•• intermediateSystems biology Computational biology Simulation experiment Modelling and simulation Modeling biomodel dynamic simulations COMBINE OMEX SED-ML … -
One line perl
•• intermediate -
Recorded webinar
Visualising integrated single cell and spatial transcriptomics datasets
Transcriptomics Imaging Omics
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Access Bioinformatics Databases with Biopython
data-science life-sciences data-analysis health-informatics
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sbwiecko/intuitive_biostatistics
Statistics and probability Python R Statistics
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Workshop, Presentation, hands-on tutorial
FEGA Metadata Technical Deep Dive
•• intermediateValidation linked data json JSON-LD JSON Schemas Federated EGA FEGA FAIR principles Metadata validation EGA … -
Recorded webinar
Retrieving biological data from EMBL-EBI resources using Dbfetch
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Recorded webinar
BioStudies database: aggregating all outputs of a life sciences study
Literature and language Experimental design and studies
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Training materials, Poster
Structuring of Data and Metadata in Bioimaging: Concepts and technical Solutions in the Context of Linked Data
• beginnerBioimaging Data management Metadata linked data Semantic Web technologies Microscopy data OME data model RDF ontology FDO … -
Documentation, Exercise, Handout, Scripts
PPB18 - Programming in Python for Biologists (2018)
•• intermediateData retrieval Data handling Bioinformatics Biology Biological databases -
Recorded webinar
Sight, vision and UniProt proteins
Proteins Ophthalmology
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Introduction to BacDive
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TGAC_SeqAhead: NGS current challenges and data analysis for plant researchers
Bioinformatics Database management Plant biology Sequence analysis Ngs Ngs bioinformatics Plants bioinformatics
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Slides
Contributing to the Galaxy Training Material - Creating a new tutorial - Slides
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Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations … -
WEBINAR: Making sense of phosphoproteomics data with Phosphomatics
Proteomics Protein modifications Phosphoproteomics
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WEBINAR: Making sense of phosphoproteomics data with Phosphomatics
Phosphoproteomics Proteomics Mass spectrometry