Content Providers

  • DTLS - Dutch Techcentre For Life Sciences

    DTL focuses on the great potential of high-end technologies in pioneering life science research,...

    22 training materials
    2 upcoming events (184 past events)
    DTLS - Dutch Techcentre For Life Sciences https://tess.elixir-europe.org/content_providers/dtls-dutch-techcentre-for-life-sciences DTL focuses on the great potential of high-end technologies in pioneering life science research, and on the skills and solutions to professionally use computers to deal with the ever-growing data streams in research. /system/content_providers/images/000/000/003/original/logo.png?1469458221
  • Department of Bioinformatics - BiGCaT, Maastricht University

    The department of Bioinformatics-BiGCaT is part of NUTRIM the school of Nutrition and...

    8 training materials
    0 upcoming events (1 past event)
    Department of Bioinformatics - BiGCaT, Maastricht University https://tess.elixir-europe.org/content_providers/department-of-bioinformatics-bigcat-maastricht-university The department of Bioinformatics-BiGCaT is part of NUTRIM the school of Nutrition and Translational Research in Metabolism at Maastricht University, the Netherlands. It was founded in 2001 by Prof. dr. Chris Evelo aiming at employing bioinformatics approaches in systems biology to integrate experimental data and data with current knowledge. Integrative Systems Biology is being developed and applied in various research fields. The department has four core research areas; 1) Metabolic diseases, 2) Micronutrients, 3) Toxicity and risk Assessment and 4) Rare diseases. Within these areas different types of data, like transcriptomics, proteomics, metabolomics and (epi)genomics data, are collected , integrated and combined with existing knowledge /system/content_providers/images/000/000/093/original/logo_05_72dpi.gif?1528366508
  • Showing 30 materials.
    Helis Academy - Data Management Plans, why and how?

    Research Data Management The organisation of data throughout the research project everyday management of research data (storage, file naming, preservation) how will data be preserved and shared after the project is completed?

    Scientific topics: Data management

    Keywords: Data managment plan, Data Life Cycle

    Resource type: Slides, PDF

    Helis Academy - Data Management Plans, why and how? https://tess.elixir-europe.org/materials/data-management-plans-why-and-how Research Data Management The organisation of data throughout the research project everyday management of research data (storage, file naming, preservation) how will data be preserved and shared after the project is completed? Data management Data managment plan, Data Life Cycle Life Science Researchers
    Introduction to FAIR data stewardship

    FAIR data Stewardship: How to improve the reuse of nanosafety data

    Scientific topics: Data management

    Keywords: FAIR

    Introduction to FAIR data stewardship https://tess.elixir-europe.org/materials/introduction-to-fair-data-stewardship FAIR data Stewardship: How to improve the reuse of nanosafety data Data management FAIR Life Science Researchers
    An introduction to the role of experimental data in Intellectual Property

    data ownership the role of experimental data in acquiring a patent the role of data in establishing a prior use right trade secrets

    Keywords: patents

    Resource type: PDF

    An introduction to the role of experimental data in Intellectual Property https://tess.elixir-europe.org/materials/an-introduction-to-the-role-of-experimental-data-in-intellectual-property data ownership the role of experimental data in acquiring a patent the role of data in establishing a prior use right trade secrets patents
    FAIRification & Data modelling

    Wikidata fairification

    Keywords: FAIR, linked data, ontologies, metadata

    Resource type: Slides

    FAIRification & Data modelling https://tess.elixir-europe.org/materials/fairification-data-modelling Wikidata fairification FAIR, linked data, ontologies, metadata Life Science Researchers bioinformaticians
    Essential Steps of the FAIRification Process

    Since 2014, a number of FAIR Stakeholders have developed tools and methods around the FAIRifcation of typical datasets. In the last 5 years, these efforts were field tested in a series of "Bring Your Own Data" Workshops". This material documents the accumulated practical & teaching...

    Keywords: FAIR, data stewardship, metadata, linked data

    Resource type: Training materials

    Essential Steps of the FAIRification Process https://tess.elixir-europe.org/materials/essential-steps-of-the-fairification-process Since 2014, a number of FAIR Stakeholders have developed tools and methods around the FAIRifcation of typical datasets. In the last 5 years, these efforts were field tested in a series of "Bring Your Own Data" Workshops". This material documents the accumulated practical & teaching experiences from BYODS as well as more high-level FAIR awareness trainings. This document was formerly known as the "Big Book of FAIRification". FAIR, data stewardship, metadata, linked data Researchers Support Staff data librarians software developers, bioinformaticians
    FAIR Data Stewardship - Data sharing, archiving and publishing

    The workshop introduces the concepts and gives hands-on experience with tools which allow safe data sharing, archiving and publishing on example services. Moreover, participants of the workshop explore together different roles which are defined around data publication and how responsibilities...

    Keywords: Data Life Cycle, FAIR, data management, data stewardship, data repositories, data sharing, data publication

    Resource type: Slides, Training materials

    FAIR Data Stewardship - Data sharing, archiving and publishing https://tess.elixir-europe.org/materials/fair-data-stewardship-data-sharing-archiving-and-publishing The workshop introduces the concepts and gives hands-on experience with tools which allow safe data sharing, archiving and publishing on example services. Moreover, participants of the workshop explore together different roles which are defined around data publication and how responsibilities towards data are distributed. The course does not require any prior knowledge. Data Life Cycle, FAIR, data management, data stewardship, data repositories, data sharing, data publication General Interest Scientists Researchers data stewards
    Helis Academy - Persistent identifiers and their use cases

    Managing increasing numbers of data objects Sharing data from different sourcesamongst researchers Data needs to be (globally) identifiable and addressable to ensure reuse of data Data citation Linking data from different source

    Keywords: Referencing data and code, Findability of data and code, Identifying data and code, data management

    Resource type: Slides

    Helis Academy - Persistent identifiers and their use cases https://tess.elixir-europe.org/materials/persistent-identifiers-and-their-use-cases Managing increasing numbers of data objects Sharing data from different sourcesamongst researchers Data needs to be (globally) identifiable and addressable to ensure reuse of data Data citation Linking data from different source Referencing data and code, Findability of data and code, Identifying data and code, data management data stewards Life Science Researchers bioinformaticians
    Helis Academy - Data Sharing, publishing and archiving

    Basic knowledge of: o Know what a repository is o Characteristics of Data Sharing, Archiving and Publishing o Knowledge of major platforms for Sharing, Archiving and Publishing Hands on experience: o Dataverse possibilities for sharing and publishing o Designing requirements digital...

    Keywords: data sharing, Data publishing, data archiving, data repositories, data management

    Resource type: Slides

    Helis Academy - Data Sharing, publishing and archiving https://tess.elixir-europe.org/materials/data-sharing-publishing-and-archiving Basic knowledge of: o Know what a repository is o Characteristics of Data Sharing, Archiving and Publishing o Knowledge of major platforms for Sharing, Archiving and Publishing Hands on experience: o Dataverse possibilities for sharing and publishing o Designing requirements digital archives o Finding your ideal archive data sharing, Data publishing, data archiving, data repositories, data management
    Introduction to Persistent Identifiers

    Module also available as self-study material in data carpentry style

    Scientific topics: Data management

    Keywords: system relevant metadata for data, PID metadata, Python API pyhandle, Persistent Identifiers

    Resource type: course materials

    Introduction to Persistent Identifiers https://tess.elixir-europe.org/materials/introduction-to-persistent-identifiers Module also available as self-study material in data carpentry style Data management system relevant metadata for data, PID metadata, Python API pyhandle, Persistent Identifiers data stewards data managers bioinformaticians
    Workshop FAIR & Data stewardship for the 2020 ITN COSMIC

    This material is part of an introductory data stewardship workshop for the Marie Curie ITN COSMIC project (Combatting Disorders of Adaptive Immunity with Systems MedICine).

    Scientific topics: Data management, FAIR data

    Operations: Data handling, Analysis

    Keywords: Data analysis, Data collection, Data management planning, Data preserving, Data processing, Data reuse, Data sharing

    Resource type: Slidedeck

    Workshop FAIR & Data stewardship for the 2020 ITN COSMIC https://tess.elixir-europe.org/materials/workshop-fair-data-stewardship-for-the-2020-itn-cosmic This material is part of an introductory data stewardship workshop for the Marie Curie ITN COSMIC project (Combatting Disorders of Adaptive Immunity with Systems MedICine). Data management FAIR data Data analysis, Data collection, Data management planning, Data preserving, Data processing, Data reuse, Data sharing PhD candidate
    Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle

    This material is part of an introductory FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)

    Scientific topics: FAIR data, Data management

    Operations: Analysis, Data handling

    Keywords: Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse

    Resource type: Slidedeck

    Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle https://tess.elixir-europe.org/materials/workshop-fair-data-stewardship-for-the-2020-itn-proevlifecycle This material is part of an introductory FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle) FAIR data Data management Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse PhD candidate
    Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle

    This material is part of a FAIR data stewardship follow up workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)

    Scientific topics: FAIR data, Data management

    Operations: Analysis, Data handling

    Keywords: Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse

    Resource type: Slidedeck

    Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle https://tess.elixir-europe.org/materials/workshop-fair-data-stewardship-for-the-2021-itn-proevlifecycle This material is part of a FAIR data stewardship follow up workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle) FAIR data Data management Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse PhD candidate
    Helis Academy course FAIR data stewardship 2021, Day 1, Funder requirements

    This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

    Scientific topics: Data management, FAIR data

    Operations: Analysis, Data handling

    Keywords: Data management planning, FAIR data

    Resource type: Slidedeck

    Helis Academy course FAIR data stewardship 2021, Day 1, Funder requirements https://tess.elixir-europe.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-funder-requirements This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 Data management FAIR data Data management planning, FAIR data PhD candidate
    Helis Academy course FAIR data stewardship 2021, Day 1, Introduction Landscape Wrap up

    This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

    Scientific topics: FAIR data, Data management

    Operations: Data handling, Analysis

    Keywords: Data management planning, FAIR data

    Resource type: Slidedeck

    Helis Academy course FAIR data stewardship 2021, Day 1, Introduction Landscape Wrap up https://tess.elixir-europe.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-introduction-landscape-wrap-up-f41b3204-b9e4-486c-90cd-c2a073c0b785 This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 FAIR data Data management Data management planning, FAIR data PhD candidate
    Helis Academy course FAIR data stewardship 2021, Day 2, Finding and capturing data

    This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

    Scientific topics: Data quality management, FAIR data

    Operations: Analysis

    Keywords: Data collection

    Resource type: Slidedeck

    Helis Academy course FAIR data stewardship 2021, Day 2, Finding and capturing data https://tess.elixir-europe.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-finding-and-capturing-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 Data quality management FAIR data Data collection PhD candidate
    Helis Academy course FAIR data stewardship 2021, Day 2, Finding and capturing data

    This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

    Scientific topics: Data management, FAIR data

    Operations: Data handling

    Keywords: Data collection

    Resource type: Slidedeck

    Helis Academy course FAIR data stewardship 2021, Day 2, Finding and capturing data https://tess.elixir-europe.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-finding-and-capturing-data-f94ad623-4ae5-4e48-925e-2afdc8567c6d This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 Data management FAIR data Data collection PhD candidate
    Helis Academy course FAIR data stewardship 2021, Day 1, Publisher requirements

    This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

    Scientific topics: Data management, FAIR data

    Operations: Analysis, Data handling

    Keywords: Data management planning, FAIR data, Data preserving, Data sharing

    Resource type: Slidedeck

    Helis Academy course FAIR data stewardship 2021, Day 1, Publisher requirements https://tess.elixir-europe.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-publisher-requirements This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 Data management FAIR data Data management planning, FAIR data, Data preserving, Data sharing PhD candidate
    Helis Academy course FAIR data stewardship 2021, Day 1, Institute requirements

    This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

    Scientific topics: Data management, FAIR data

    Operations: Analysis, Data handling

    Keywords: Data preserving, Data reuse, Data management planning, Data sharing, FAIR data

    Resource type: Slidedeck

    Helis Academy course FAIR data stewardship 2021, Day 1, Institute requirements https://tess.elixir-europe.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-institute-requirements This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 Data management FAIR data Data preserving, Data reuse, Data management planning, Data sharing, FAIR data PhD candidate
    Helis Academy course FAIR data stewardship 2021, Day 2, Tools for processing and analysing data

    This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

    Scientific topics: Data management, FAIR data

    Operations: Analysis, Data handling

    Keywords: Data analysis, Data processing

    Resource type: Slidedeck

    Helis Academy course FAIR data stewardship 2021, Day 2, Tools for processing and analysing data https://tess.elixir-europe.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-tools-for-processing-and-analysing-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 Data management FAIR data Data analysis, Data processing PhD candidate
    Helis Academy course FAIR data stewardship 2021, Day 2, Infrastructure for storing and sharing data

    This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

    Scientific topics: FAIR data, Data management

    Operations: Data handling, Analysis

    Keywords: Data analysis, Data processing, Data sharing

    Resource type: Slidedeck

    Helis Academy course FAIR data stewardship 2021, Day 2, Infrastructure for storing and sharing data https://tess.elixir-europe.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-infrastructure-for-storing-and-sharing-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 FAIR data Data management Data analysis, Data processing, Data sharing PhD candidate
    Online course 'Learn to write your Data Management Plan'

    Writing a Data Management Plan can be new to you. ‘Learn to write your Data Management Plan’, an online self-study course, can help you decide how to take good care of your valuable research data. During the course you are writing your DMP step by step. As a result you have written a DMP for...

    Keywords: Data management plan, data management

    Resource type: e-learning

    Online course 'Learn to write your Data Management Plan' https://tess.elixir-europe.org/materials/online-course-learn-to-write-your-data-management-plan Writing a Data Management Plan can be new to you. ‘Learn to write your Data Management Plan’, an online self-study course, can help you decide how to take good care of your valuable research data. During the course you are writing your DMP step by step. As a result you have written a DMP for you research project. While you are training, you can write your DMP in DMPonline. You can do the whole course or just parts of it. That is all up to you. Data management plan, data management Life Science Researchers
    Helis Academy - FAIRify your data

    FAIRify your data: FAIRification & Data modelling using linked data

    Keywords: linked data, Wikidata, data management

    Resource type: Slides

    Helis Academy - FAIRify your data https://tess.elixir-europe.org/materials/helis-academy-fairify-your-data FAIRify your data: FAIRification & Data modelling using linked data linked data, Wikidata, data management bioinformaticians software developers, bioinformaticians Life Science Researchers
    Programming in the Life Sciences

    This is a OER around a six day course on using JavaScript to program the life sciences web, but with a focus on the Open PHACTS API.

    Scientific topics: Pharmacology, Drug discovery

    Programming in the Life Sciences https://tess.elixir-europe.org/materials/programming-in-the-life-sciences This is a OER around a six day course on using JavaScript to program the life sciences web, but with a focus on the Open PHACTS API. Pharmacology Drug discovery bioinformaticians
    BridgeDbR Tutorial

    Bioconductor Vignette on how to use BridgeDb in the R environment for identifier mapping for genes, proteins, and metabolites.

    Keywords: ELIXIR RIR, BridgeDb

    Resource type: Tutorial, Vignette

    BridgeDbR Tutorial https://tess.elixir-europe.org/materials/bridgedbr-tutorial Bioconductor Vignette on how to use BridgeDb in the R environment for identifier mapping for genes, proteins, and metabolites. ELIXIR RIR, BridgeDb Biologists Chemists
    #metawinterschool contribution by BiGCaT

    Training material from the denBI-organized Metabolomics Winterschool 2018, discussing identifier mapping and pathway analysis.

    Scientific topics: Metabolomics

    Keywords: Metabolomics, Identifiers, ELIXIR RIR, BridgeDb

    Resource type: Tutorial

    #metawinterschool contribution by BiGCaT https://tess.elixir-europe.org/materials/metawinterschool-contribution-by-bigcat Training material from the denBI-organized Metabolomics Winterschool 2018, discussing identifier mapping and pathway analysis. Metabolomics Metabolomics, Identifiers, ELIXIR RIR, BridgeDb Biologists
    SPARQLing Biology: a beginners course

    Course given at BioSB 2019 for biologists about SPARQL.

    Scientific topics: Biology

    Operations: Query and retrieval

    Keywords: Sparql queries, Sparql syntax

    Resource type: Tutorial

    SPARQLing Biology: a beginners course https://tess.elixir-europe.org/materials/sparqling-biology-a-beginners-course Course given at BioSB 2019 for biologists about SPARQL. Biology Sparql queries, Sparql syntax Biologists Chemists
    Use Scholia and Wikidata to find scientific literature

    Scholia is a useful tool for finding scientific literature. Based on the main topic of a publication, you can find literature similar to a publication you are looking into or literature you didn’t know about or consider. Additionally, you can take advantage of all of the annotation work of others...

    Keywords: Literature

    Resource type: Tutorial

    Use Scholia and Wikidata to find scientific literature https://tess.elixir-europe.org/materials/use-scholia-and-wikidata-to-find-scientific-literature Scholia is a useful tool for finding scientific literature. Based on the main topic of a publication, you can find literature similar to a publication you are looking into or literature you didn’t know about or consider. Additionally, you can take advantage of all of the annotation work of others when finding literature. Proper annotation also makes scientific literature more findable. Literature Researchers
    How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene

    Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping.

    Scientific topics: Genomics, Genetic variation

    Keywords: ELIXIR RIR, BridgeDb

    Resource type: Tutorial

    How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene https://tess.elixir-europe.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping. Genomics Genetic variation ELIXIR RIR, BridgeDb Biologists
    BridgeDb-Matlab Usage Instructions

    Instructions on how to install and use the BridgeDb functionality in Matlab.

    Keywords: ELIXIR RIR, BridgeDb

    BridgeDb-Matlab Usage Instructions https://tess.elixir-europe.org/materials/bridgedb-matlab-usage-instructions Instructions on how to install and use the BridgeDb functionality in Matlab. ELIXIR RIR, BridgeDb
    A network biology workflow to study transcriptomics data of the diabetic liver

    Description of a network biology workflow for pathway and network analysis methods to study the rewiring of the diabetic liver.

    Keywords: Biological networks, Network Visualization

    A network biology workflow to study transcriptomics data of the diabetic liver https://tess.elixir-europe.org/materials/a-network-biology-workflow-to-study-transcriptomics-data-of-the-diabetic-liver Description of a network biology workflow for pathway and network analysis methods to study the rewiring of the diabetic liver. Susan Coort Martina Kutmon Chris Evelo Biological networks, Network Visualization
    Showing 2 upcoming events. Found 185 past events. View all results.
    • Data analysis for Metabolomics

      7 - 8 February 2022

      Wageningen Campus, Wageningen Campus

      Elixir node event
      Data analysis for Metabolomics https://tess.elixir-europe.org/events/data-analysis-for-metabolomics Metabolomics experiments based on mass spectrometry (MS) or nuclear magnetic resonance (NMR) produce large and complex data sets. This course will introduce approaches to process and analyse data and design high-quality experiments. Through hands-on workshops and lectures highlighting the different… The post Data analysis for Metabolomics appeared first on Dutch Techcentre for Life Sciences. 2022-02-07 09:00:00 UTC 2022-02-08 00:00:00 UTC Wageningen Campus, Wageningen Campus, Wageningen Campus Wageningen Campus Wageningen Campus Wageningen Campus [] [] [] workshops_and_courses [] []
    • Integrated modeling and optimization

      13 - 17 December 2021

      Wageningen Campus, Netherlands

      Elixir node event
      Integrated modeling and optimization https://tess.elixir-europe.org/events/integrated-modeling-and-optimization Course date 13-17 December 2021, Wageningen Course coordinator Natal van Riel, Eindhoven University of Technology Lecturers Prof. Natal van Riel, Eindhoven University of Technology (course coordinator) Dr. Aalt-Jan van Dijk, Wageningen University & Research Prof. Jaap Molenaar, Wageningen University &… The post Integrated modeling and optimization appeared first on Dutch Techcentre for Life Sciences. 2021-12-13 09:00:00 UTC 2021-12-17 00:00:00 UTC Wageningen Campus, Netherlands, Wageningen Campus, Netherlands Wageningen Campus, Netherlands Wageningen Campus Netherlands [] [] [] workshops_and_courses [] []