Training materials
Tools: BioSimulators or BridgeDb or BridgeDb API or COPASI or Cytoscape or EDAM-Browser or ORGANISMS or stringApp
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Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
Video
Parameter Scanning and Sampling in COPASI
• beginnerSimulation experiment Modelling and simulation Analysis Visualisation SystemsBiology ComputationalBiology Computational modelling Kinetic modeling COPASI -
Video
Metabolic Control Analysis in COPASI
• beginnerSimulation experiment Systems biology Modelling and simulation Analysis Visualisation SystemsBiology ComputationalBiology Computational modelling Kinetic modeling COPASI -
Video
Steady State Analysis in COPASI
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation Visualisation -
Video
Time Course Simulation in COPASI
• beginnerSimulation experiment Modelling and simulation Visualisation SystemsBiology ComputationalBiology Computational modelling Kinetic modeling COPASI -
Video
Model Creation using COPASI
• beginnerSimulation experiment Modelling and simulation Visualisation SystemsBiology ComputationalBiology Computational modelling modeling Biomodelling Model Kinetic modeling COPASI -
WEBINAR: bio.tools - making it easier to find, understand and cite biological tools and software
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Identifier mapping with Cytoscape
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Tutorial, Documentation
BioSimulators tutorial and help
•• intermediateSystems biology Computational biology Simulation experiment Modelling and simulation Modeling biomodel dynamic simulations COMBINE OMEX SED-ML SBML BNGL -
Tutorial
How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene
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