Training materials
Tools: AlphaFold 2 or BridgeDb API or Datanator or ORGANISMS or STITCH or V-pipe or runBioSimulations
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e-learning
Use V-pipe to evaluate SARS-CoV-2 sequence variability
• beginnerVirology Sequence analysis SARS-CoV-2 Variant calling -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Tutorial
Datanator tutorial
• beginnerMolecular biology Cell biology Systems biology Bioinformatics Omics Query and retrieval Filtering genomics Proteomics transcriptomics Metabolomics reaction kinetics Kinetic modeling meta analysis -
Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling -
Tutorial, Vignette
BridgeDbR Tutorial
• beginnerELIXIR RIR, BridgeDb -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
STRING exercises
• beginnerBioinformatics Molecular interactions, pathways and networks Protein interactions -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation