Training materials
Status: Active
and Scientific topics: Computer science or Database management or Natural language processing or Open science or Programming languages or Toxicology or Transcription factors and regulatory sites
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lessons
R basics
• beginnerInformatics Computer science R RStudio ggplot2 Rmarkdown Quarto dplyr data visualisation -
Slides
Navigating Licensing in Bioinformatics: Software and Data Perspectives
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Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
Tutorial
From transcriptomics to mechanistic models of signalling
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
lessons, e-learning
Introduction to Data Management Practices - Data Management Plans
• beginnerData management FAIR data Open science CONVERGE Data Stewardship Wizard Data management plan -
lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Cleaning tabular data with OpenRefine
• beginnerData management Open science FAIR data FAIR CONVERGE -
lessons, e-learning
Introduction to Data Management Practices - Data publication
• beginnerData management Open science FAIR data FAIR CONVERGE -
lessons, e-learning
Introduction to Data Management Practices - Open Science and FAIR
• beginnerData management Open science FAIR data FAIR CONVERGE