Training materials
Difficulty level: Intermediate
and Contributors: Bilal Shaikh or Björn Grüning or Carina Silva or Laura Leroi or Mark Beaumont or Markus Englund or Munazah Andrabi
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
Video
RDMbites: Image data
•• intermediateimaging data management -
Video
RDMbites: Sequencing data
•• intermediatetranscriptomics FASTQ FastQC Sequencing -
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
hands-on tutorial
Genome annotation with Funannotate
•• intermediateGenome Annotation eukaryote gmod jbrowse1 -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
Secretome Prediction
•• intermediateProteomics human work-in-progress -
hands-on tutorial
Detection and quantitation of N-termini (degradomics) via N-TAILS
•• intermediateProteomics -
Tutorial, Documentation
BioSimulators tutorial and help
•• intermediateSystems biology Computational biology Simulation experiment Modelling and simulation Modeling biomodel dynamic simulations COMBINE OMEX SED-ML SBML BNGL -
Documentation, Exercise, Handout, Scripts
PGDH19 - Population Genetics Demographic History: model-based approaches (2019)
•• intermediatePopulation Genomics Phylogenetics
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