Content Providers
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GTN
The GTN is a global community of teachers, trainers, developers, administrators, and learners based around the Galaxy Platform!
For Learners
Our community provides over 370 high quality, peer-reviewed training materials...698 training materials26 events (12 past events)GTN https://training.galaxyproject.org/ https://tess.elixir-europe.org/content_providers/galaxy-training The GTN is a global community of teachers, trainers, developers, administrators, and learners based around the [Galaxy Platform](https://galaxyproject.org)! **For Learners** Our community provides over [370 high quality](https://training.galaxyproject.org/), peer-reviewed training materials from a global community of [330 instructors](https://training.galaxyproject.org/training-material/hall-of-fame/), with a focus on reproducibility and [FAIRness](https://training.galaxyproject.org/training-material/faqs/gtn/fair_training.html). **Not Just Galaxy** We've expanded our content to include data science, software development, and even alternative <abbr title="scientific workflow management systems">SciWMSs</abbr> like snakemake! **For Teachers** All of our materials are [FAIR](https://training.galaxyproject.org/training-material/faqs/gtn/fair_training.html), and we put a lot of effort into the platform's [accessibility for all audiences.](https://training.galaxyproject.org/accessibility.html). If you're interested in [contributing your own materials](https://training.galaxyproject.org/training-material/topics/contributing/) we'd love to help you share them with the world! Most of our materials are licensed CC-BY-SA so you're welcome to use these materials for your own course and classes! If you want to use a specific version of a material you may be interested in accessing them via [our archive](https://training.galaxyproject.org/archive/). **For Administrators** If you're a budding Galaxy Administrator, or an experienced one looking to catch up, the GTN is the source for all of those materials. We also work to make it easy for you as an admin to support tutorials on your infrastructure, you'll find a list of tools and their installation instructions at the bottom of every tutorial. /system/content_providers/images/000/000/078/original/GTN-400px.png?1718821926 -
Galaxy Project
There are many approaches to learning how to use Galaxy. The most popular is probably to just dive in and use it. Galaxy is simple enough to use that you can do many analyses just by exploring the interface. However, you may miss much of the power this way.
0 events (535 past events)Galaxy Project https://galaxyproject.org/events https://tess.elixir-europe.org/content_providers/galaxy-project There are many approaches to learning how to use Galaxy. The most popular is probably to just dive in and use it. Galaxy is simple enough to use that you can do many analyses just by exploring the interface. However, you may miss much of the power this way. /system/content_providers/images/000/000/094/original/galaxyproject.png?1530281075 -
IFB French Institute of Bioinformatics
The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research...
144 training materials15 events (457 past events)IFB French Institute of Bioinformatics http://www.france-bioinformatique.fr https://tess.elixir-europe.org/content_providers/ifb-french-institute-of-bioinformatics The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research infrastructure, ELIXIR. /system/content_providers/images/000/000/049/original/logo-ifb-couleur.svg?1663599376 -
ELIXIR Norway
6 training materials0 events (22 past events)ELIXIR Norway http://elixir-norway.org https://tess.elixir-europe.org/content_providers/elixir-norway /system/content_providers/images/000/000/087/original/elixir_norway_white_background.png?1530281111 -
Barcelona Supercomputing Center (BSC)
BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005,...
8 training materials0 events (9 past events)Barcelona Supercomputing Center (BSC) http://www.bsc.es https://tess.elixir-europe.org/content_providers/barcelona-supercomputing-center-bsc BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005, BSC has developed an active role in fostering HPC in Spain and Europe as an essential tool for international competitiveness in science and engineering. The centre manages the Red Española de Supercomputación (RES), and is a hosting member of the Partnership for Advanced Computing in Europe (PRACE) initiative. We actively participate in the main European HPC initiatives, in close cooperation with other European supercomputing centres. With a total staff of more than 500 R&D experts and professionals, BSC has been successful in attracting talent, and our research focuses on four fields: Computer Sciences, Life Sciences, Earth Sciences and Computer Applications in Science and Engineering. /system/content_providers/images/000/000/636/original/BSC-blue-large.jpg?1632400405 -
Jalview
Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure.
Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has...
0 events (2 past events)Jalview http://www.jalview.org/ https://tess.elixir-europe.org/content_providers/jalview Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure. Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has editing and annotation functionality within a fully integrated, multiple window interface. The sequence alignment programs Clustal Omega, Muscle, MAFFT, ProbCons, T-COFFEE, ClustalW, MSA Prob and GLProb can be run directly from within Jalview. Jalview integrates protein secondary structure prediction (JPred), generate trees, assesses consensus and conservation across sequence families. Journal quality figures can be generated from the results. The Jalview Desktop will run on Mac, MS Windows, Linux and any other platform that supports Java. It has been developed in Geoff Barton's group (www.compbio.dundee.ac.uk) in the School of Life Sciences (www.lifesci.dundee.ac.uk) at the University of Dundee with funding from the BBSRC and the Wellcome Trust. /system/content_providers/images/000/000/091/original/logo-boxg.png?1524735946 -
University of Ljubljana, Faculty of Medicine
Faculty of Medicine is part of University of Ljubljana, the oldest and largest institution of higher education in Slovenia. The faculty carries out research and provides training in the fields of medicine, dental medicine and life sciences.
University of Ljubljana, Faculty of Medicine https://www.mf.uni-lj.si/en https://tess.elixir-europe.org/content_providers/university-of-ljubljana-faculty-of-medicine Faculty of Medicine is part of University of Ljubljana, the oldest and largest institution of higher education in Slovenia. The faculty carries out research and provides training in the fields of medicine, dental medicine and life sciences. /system/content_providers/images/000/000/104/original/mf-znal.png?1539848321 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557