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Scop3P
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Presentation
Reusing existing data
Data management data licenses software licenses data journal -
Presentation
Reproducible data analysis with RStudio, github and Rmarkdown
Data architecture, analysis and design Data management Data analysis -
Presentation
Valorisation and intellectual properties in research data management
Data management intellectual property protection -
Presentation
Preserve, publish and share your data
Data curation and archival Data management data formats ELIXIR Core resources FAIR data submission -
e-learning
Introduction to Protein Structure Analysis
Visualisation Protein structure visualisation -
Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
e-learning
Data Management and Writing a Data Management Plan
• beginnerData management -
e-learning
Basic statistics in Prism
• beginnerStatistics and probability statistics -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
hands-on tutorial
A tour of Machine Learning
•• intermediateMachine learning Classification Deep Learning Machine Learning -
Presentation, course materials
Introduction to Nextflow workshop
• beginnerWorkflows Nextflow DSL2 -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
slides, R Shiny application
Proteomics Data Analysis (PDA)
•• intermediateProteomics proteomics quantitative proteomics -
slides, scripts
Bioinformatics for Proteomics
• beginnerProteomics -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
e-learning
Basic statistics theory
• beginnerStatistics and probability statistics -
hands-on tutorial
Introduction to Research Data Management
• beginnerData quality management Data curation and archival Research Data Management Research Publishing -
hands-on tutorial
Containerise data analysis with Docker and Apptainer
•• intermediateDocker image Software engineering Apptainer Computing environment Container Docker -
e-learning
Introduction to the General Data Protection Regulation (GDPR)
• beginnerProtein structure analysis Machine learning Structure prediction Best practises Data Protection General Data Protection Regulation -
online tutorial
Introduction to Single Cell ATAC-seq
• beginnerATAC-seq ArchR -
e-learning
Introduction to Linux command line
• beginnerOperating system name Linux -
hands-on tutorial
AlphaFold and friends on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction AlphaFold Database (13181) -
hands-on tutorial
Programming in Python: master your first project
• beginnerSoftware engineering data visualisation programming -
online tutorial
Electronic Lab Notebook (ELN): essentials
• beginnerData management Data curation and archival electronic lab notebook research data management -
e-learning
Introduction to CLC Main Workbench
• beginnerSequence alignment Sequence Analysis -
hands-on tutorial
Single cell RNASeq analysis
•• intermediateTranscriptomics Single-cell sequencing Single cell data transcriptomics -
hands-on tutorial
Introduction to Git and Github
• beginnerSoftware engineering Git Github Version control -
hands-on tutorial
Assess protein dynamics & post-translational modifications through ELIXIR Belgium Node services: B2BTools & Scop3P
•• intermediateProtein structure Post-translational modification site prediction Protein property AlphaFold B2BTools Biophysical profiles Post-translational modification Scop3P -
video
M365 Copilot essentials
• beginnerCopilot Generative AI
Activity log

