NBIS

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden

NBIS https://tess.elixir-europe.org/content_providers/nbis NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden /system/content_providers/images/000/000/071/original/nbislogo-green.svg?1491837518
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Showing 15 upcoming events. Found 20 past events. View all results.
  • Carpentries Instructor Training course/event (Elixir)

    3 - 5 April 2019

    Elixir node event
    Carpentries Instructor Training course/event (Elixir) https://tess.elixir-europe.org/events/carpentries-instructor-training-course-event-elixir Room Air/Fire Web page Carpentries Instructor Training Course: https://carpentries.github.io/instructor-training/ 2019-04-03 09:00:00 UTC 2019-04-05 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • NBIS course: Introduction to Bioinformatics using NGS data

    9 - 14 September 2019

    Elixir node event
    NBIS course: Introduction to Bioinformatics using NGS data https://tess.elixir-europe.org/events/nbis-course-introduction-to-bioinformatics-using-ngs-data More information will follow 2019-09-09 09:00:00 UTC 2019-09-14 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • NBIS course: Data integration, Systems Biology

    9 - 14 September 2019

    Elixir node event
    NBIS course: Data integration, Systems Biology https://tess.elixir-europe.org/events/nbis-course-data-integration-systems-biology More information will follow 2019-09-09 09:00:00 UTC 2019-09-14 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • NBIS course: Bioinformatics for Principal Investigators

    17 - 19 September 2019

    Elixir node event
    NBIS course: Bioinformatics for Principal Investigators https://tess.elixir-europe.org/events/nbis-course-bioinformatics-for-principal-investigators More information will follow 2019-09-17 09:00:00 UTC 2019-09-19 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • NBIS-SIB collaborative course: single-cell transcriptomics

    13 - 19 October 2019

    Elixir node event
    NBIS-SIB collaborative course: single-cell transcriptomics https://tess.elixir-europe.org/events/nbis-sib-collaborative-course-single-cell-transcriptomics More information will follow contact: education@nbis.se 2019-10-13 09:00:00 UTC 2019-10-19 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Course: single-cell RNA sequencing data analysis

    4 - 7 February 2019

    Elixir node event
    Course: single-cell RNA sequencing data analysis https://tess.elixir-europe.org/events/course-single-cell-rna-sequencing-data-analysis Course name: Single cell RNA sequencing data analysis Course dates: 2019-02-04 to 2019-02-06 Course location: SciLifeLab, Tomtebodavägen 23A, 171 65 Solna National course open for PhD students, postdocs, researchers and other employees in need of single cell RNA-seq data analysis skills within all Swedish universities Important dates Application opens: December 10 2018 Application closes: January 20 Confirmation to accepted students: January 22 Responsible teachers: Åsa Björklund If you do not receive information according to the above dates please contact: asa.bjorklund@scilifelab.se Course fee A course fee* of 1700 SEK will be invoiced to accepted participants. This includes lunches, coffee and course dinner.. *Please note that NBIS cannot invoice individuals Course content This course will cover the basic steps in single cell RNAseq (scRNAseq) processing and data analysis. Topics covered will include: ● An overview of the current scRNAseq techniques ● Basic overview of pipelines for processing raw reads into expression values ● Quality control of scRNAseq data ● Dimensionality reduction and clustering techniques ● Data normalization ● Differential gene expression for scRNAseq data ● Examples on how to use these tools in a research project. Entry requirements Required for being able to follow the course and complete the computer exercises ● Basic knowledge in Linux is a requirement. We will not teach Linux at the course and you may have considerable trouble to follow the practical sessions if you are not reasonably used to work in a Linux environment. ● Be able to bring your own laptop with R installed for the practical computational exercises. Instructions on installation will be sent by email to accepted participants. ● Some programming/scripting experience is required (preferably in R). Desirable: ● Experience working on the SNIC center Uppmax is desirable, but not required. We encourage accepted participants to do an Uppmax tutorial before the course. ● Previous experience with RNA-seq analysis and/or participation in NGS/RNA-seq course is an advantage. Due to limited space the course can accommodate maximum of 25 participants. If we receive more applications, participants will be selected based on several criteria. Selection criteria include correct entry requirements, motivation to attend the course as well as gender and geographical balance. Link to application: https://goo.gl/forms/0x9ssllId5Jxn9dB3 2019-02-04 09:00:00 UTC 2019-02-07 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Course: Introduction to Bioinformatics using NGS data

    4 - 9 February 2019

    Elixir node event
    Course: Introduction to Bioinformatics using NGS data https://tess.elixir-europe.org/events/course-introduction-to-bioinformatics-using-ngs-data https://www.scilifelab.se/events/introduction-to-bioinformatics-using-ngs-data-uppsala/ 2019-02-04 09:00:00 UTC 2019-02-09 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Course: Genome Annotation

    6 - 9 May 2019

    Elixir node event
    Course: Genome Annotation https://tess.elixir-europe.org/events/course-genome-annotation More information will follow 2019-05-06 09:00:00 UTC 2019-05-09 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Course: RNAseq

    13 - 16 May 2019

    Elixir node event
    Course: RNAseq https://tess.elixir-europe.org/events/course-rnaseq More information will follow 2019-05-13 09:00:00 UTC 2019-05-16 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Course: Introduction to Bioinformatics using NGS data

    20 - 25 May 2019

    Elixir node event
    Course: Introduction to Bioinformatics using NGS data https://tess.elixir-europe.org/events/course-introduction-to-bioinformatics-using-ngs-data-72016a5b-d1c8-4b38-a688-c929f5df2b39 More information will follow 2019-05-20 09:00:00 UTC 2019-05-25 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Course: Quick and clean - advanced python for data science in Biology

    20 - 25 May 2019

    Elixir node event
    Course: Quick and clean - advanced python for data science in Biology https://tess.elixir-europe.org/events/course-quick-and-clean-advanced-python-for-data-science-in-biology More information will follow 2019-05-20 09:00:00 UTC 2019-05-25 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Course: RaukR

    10 - 21 June 2019

    Elixir node event
    Course: RaukR https://tess.elixir-europe.org/events/course-raukr More information will follow 2019-06-10 09:00:00 UTC 2019-06-21 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • NBIS course (prel.): Epigenomics data analysis

    24 - 27 September 2019

    Elixir node event
    NBIS course (prel.): Epigenomics data analysis https://tess.elixir-europe.org/events/nbis-course-prel-chip-seq-data-analysis More information will follow contact: education@nbis.se 2019-09-24 09:00:00 UTC 2019-09-27 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • NBIS course (prel.): Python programming with applications to bioinformatics

    23 - 28 September 2019

    Elixir node event
    NBIS course (prel.): Python programming with applications to bioinformatics https://tess.elixir-europe.org/events/nbis-course-prel-python-programming-with-applications-to-bioinformatics More information will follow contact: education@nbis.se 2019-09-23 09:00:00 UTC 2019-09-28 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []
  • Course: Biostatistics Essentials: a blackboard approach

    21 - 24 May 2019

    Elixir node event
    Course: Biostatistics Essentials: a blackboard approach https://tess.elixir-europe.org/events/course-biostatistics-essentials-a-blackboard-approach Course name: Biostatistics Essentials: a blackboard approach Course dates: 2019-05-21 and 2019-05-23 Course location: SciLifeLab, Uppsala University, BMC, Husargatan 3 Please apply here: https://goo.gl/forms/6aIQ4BFIrGDJ9cL92 ------------------------------------------------ National course open for PhD students, postdocs, researchers and other employees in need of biostatistical skills within all Swedish universities. The course is geared towards life scientists wanting to be able to understand and use basic statistical methods. It would also suit those already applying biostatistical methods but have never got a chance to reflect on and truly grasp the basic statistical concepts, such as the commonly misinterpreted p-value! Important date Application opens: now Application closes: 2019-03-31 Confirmation to accepted students: 2019-04-16 Responsible teachers: Olga Dethlefsen, Eva Freyhult If you do not receive information according to the above dates please contact olga.dethlefsen@nbis.se, eva.freyhult@nbis.se Course content ● Basic statistical theory and concepts incl. stochastic variables, density and distribution functions, central limit theorem, confidence intervals ● Hypothesis testing ● Resampling ● Linear and logistic regression methods ● Model selection and regularization ● Unsupervised learning, incl. clustering and dimension reduction methods Education In this course we focus on active learning approach. The course participants are expected to do some pre-course reading and exercises, corresponding up to 16h studying. The education consists of teaching blocks alternating between mini-lectures, group discussions, live coding sessions etc. A special focus is put on understanding basic concepts by solving problems with pen and paper. We believe in less-is-more principle, so be ready to say no to digital exhaustion to truly learn something with our modern “blackboard approach”. Literature ● An Introduction to Statistical Learning, Gareth James, Daniela Witten, Trevor Hastie and Robert Tibshirani (.pdf freely available) ● Additional teachers’ choice Entry requirements ● No prior knowledge is assumed ● BYOL (bring your own laptop) with R and RStudio installed ● Prior experience using R and RStudio is welcome; pre-course exercises will be available for those new to R/RStudio Due to limited space the course can accommodate maximum of 25 participants. If we receive more applications, participants will be selected based on several criteria. Selection criteria include correct entry requirements, motivation to attend the course as well as gender and geographical balance. Course fee A course fee* of 1700 SEK will be invoiced to accepted participants. The fee includes lunches, coffee and snacks. *Please note that NBIS cannot invoice individuals 2019-05-21 09:00:00 UTC 2019-05-24 00:00:00 UTC [] jessica.lindvall@scilifelab.se [] [] [] [] []