Search results
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12ème Ecole de Bioinformatique AVIESAN-IFB-Inserm
5 - 10 November 2023
Roscoff, France
Face-to-face
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Workshops and courses
SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING - session 13/11/2023 - 14/11/2023
13 - 14 November 2023
Toulouse-Auzeville, France
Face-to-face
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Workshops and courses
Principes FAIR dans un projet de bioinformatique - Session 2023
9 - 11 October 2023
Paris, France
Face-to-face
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Workshops and courses
New session of Molecular Phylogeny - Level 2
4 - 6 October 2023
Montpellier, France
Face-to-face
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Workshops and courses
New session of Python scripts for bioinformatics and Linux
23 - 25 October 2023
Montpellier, France
Face-to-face
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Workshops and courses
Improve your command line skills by learning a few words of Perl - session 28/11/2023
28 November 2023
Toulouse-Auzeville, France
Face-to-face
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ETBII 2023
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IFB Shiny training
•• intermediateR-programming Reproducible Science -
The IFB cloud for bioinformatics
Cloud computing Virtual machine
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Training materials
FAIR principles applied to bioinformatics
•• intermediateFAIR Reproducible Science Open science Data analysis Data processing -
Webinar, Slides, Video
WheatIS DataDiscovery webinar
• beginnerData management wheat information system data discovery -
Training materials
Plant Phenotyping Data managment (MIAPPE)
• beginnerPhenomics Plant biology Data management Annotation Formatting Plant Phenotyping Data-format data sharing -
Video, Slides
Plant Phenotyping Data managment Webinar (MIAPPE)
• beginnerPlant biology Phenomics Data quality management Data submission, annotation, and curation Standardisation and normalisation -
Slides
FAIR data - Module 1 (research data)
• beginnermetadata Data Life Cycle Reproducibility Data management plan -
Slides
FAIR data - Module 2 (data life cycle)
• beginnerData management Biology Bioinformatics Data handling Data preserving Data storage -
Slides
FAIR data - Module 3 (Metadata)
• beginnerBioinformatics Biology Data management Data handling metadata data annotation life science standards data sharing -
Slides
FAIR data - Module 4 (share and publish data)
• beginnerBioinformatics Biology Data management data sharing Data publishing legal framework data warehouse licensing data reuse -
Getting started with Bioschemas
• beginnerBioschemas Standards -
Docker for Beginners
Docker
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Statistics with RStudio
R
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Docker Tutorial
Docker
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Chip-seq: Motif Analysis Tutorial
Chip-seq Motif analysis NGS Pattern recognition
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Chip Seq: Annotation and visualization Tutorial
Annotation Chip-seq Data Visualization NGS
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Chip Seq: Annotation and visualization Lesson
Annotation Chip-seq Data Visualization NGS
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Chip-seq: Peak calling tutorial
Chip-seq NGS Peak calling
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Chip-seq: Introduction to the Workshop
Chip-Seq
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Snakemake tutorial: Gene regulation
Gene regulation Snakemake
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IFB French Institute of Bioinformatics
The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research...
139 training materials11 events (428 past events)IFB French Institute of Bioinformatics http://www.france-bioinformatique.fr https://tess.elixir-europe.org/content_providers/ifb-french-institute-of-bioinformatics The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research infrastructure, ELIXIR. /system/content_providers/images/000/000/049/original/logo-ifb-couleur.svg?1663599376 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557