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Materials (65)

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Video

Useful ontologies for harmonizing cohort data

• beginner
Data integration and warehousing Data management Ontology and terminology Ontologies Cohort data data annotation
e-learning

Biocuration: A curated set of EMBL-EBI online courses

Data curation and archival Database management Natural language processing Ontology and terminology Programmatic access Programming Text mining Biocuration Biocurators User experience …
Video

Annotating data using next generation biobanking ontology (NGBO)

• beginner
Data integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary
Video

Annotating data using ontologies

• beginner
Data management Data integration and warehousing Ontology and terminology Ontologies Annotation Data integration
Video

Data harmonization and enrichment using EMBL-EBI ontology tools

• beginner
Data management Data curation and archival Ontology and terminology CINECA data harmonization Annotation Ontologies
Video, Training materials, E-learning

Training Primer (RDF and SPARQL)

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data …
Video

Solutions for overcoming cohort data integration challenges using ontology: an introduction

• beginner
Ontology and terminology Data integration and warehousing Data management Ontologies Data integration Annotation
Video

Querying versioned terminologies - How to improve the accuracy of data analysis?

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Query data Versioning of Terminology Clinical ATC …
Webinar, Training materials

An introduction to DisProt

• beginner
Curation Databases Ontologies Intrinsically disordered proteins Protein sequence analysis Protein function analysis
Webinar, Training materials

Exploring structural and functional annotations of IDPs with DisProt

•• intermediate
Curation Databases Ontologies Intrinsically disordered proteins Protein sequence analysis Protein function analysis
Video, Training materials, E-learning

Semantic Standards

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR …
Video, Training materials, E-learning

Expanding the SPHN RDF Schema

• beginner
Ontology and terminology Medical informatics FAIR data Data management Computer science Data editing Ontology visualisation Visualisation Data handling Clinical data …
Video

Applying data standards to the harmonization of COVID-19 datasets from different sources

• beginner
Data integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies
Documentation, API reference

bio.tools documentation

• beginner
Bioinformatics Data curation and archival Computational biology Ontology and terminology Data retrieval Tools Curation Software Sofware curation Tool curation
Video, Training materials, Mock data, E-learning

RDF Schema and Data Visualization

• beginner
Data visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval …
Webinar

Ontology Lookup Service (OLS)

Ontology and terminology
Recorded webinar

Ontologies for biocuration

Data curation and archival
Tutorial

OpenRiskNet: Ontology Walkthrough and Workshop

• beginner
Toxicology Ontology and terminology
Recorded webinar

QuickGO: Gene ontology annotation

Ontology and terminology
Documentation

InterMine user manual

• beginner
Data querying data visualization Data download FAIR
Tutorial

InterMine user tutorial

• beginner
Data querying Data analysis Data download FAIR
Mining enzyme data in UniProtKB using Rhea

• beginner
biochemistry data mining lipids ontology proteins and proteomes training alan bridge group
WEBINAR: bio.tools - making it easier to find, understand and cite biological tools and software

Workflows Ontology and terminology Bioinformatics Research software EDAM FAIR
e-learning

Adding and updating best practice metadata for Galaxy tools using the bio.tools registry

• beginner
Software engineering Development in Galaxy
BD2K Data Science Open Educational Resources (OERs)

Ontology Biocuration Curation Identifiers Standards
video

RDMbites | Metadata: where to find published ontologies

RDM data management
Tutorial

Adding nanomaterial data

•• intermediate
Toxicology Database management ontologies enanomapper RDF
Giving data context, structure and meaning

metadata Ontologies
Video, Presentation

The essentials of DUO codes

Bioinformatics Genomics bioinformatics FEGA Federated EGA ELIXIR Converge
e-learning

Vocabularies for bioinformatics

• beginner
Bioinformatics Data management Data curation and archival Data handling Data retrieval Database search Ontologies Interoperability Standardised vocabulary Standards