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Materials (46)

Showing 30 materials out of 46

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Video

Useful ontologies for harmonizing cohort data

• beginner
Data integration and warehousing Data management Ontology and terminology Ontologies Cohort data data annotation
Video

Annotating data using ontologies

• beginner
Data management Data integration and warehousing Ontology and terminology Ontologies Annotation Data integration
Webinar, Training materials

An introduction to DisProt

• beginner
Curation Databases Ontologies Intrinsically disordered proteins Protein sequence analysis Protein function analysis
Webinar, Training materials

Exploring structural and functional annotations of IDPs with DisProt

•• intermediate
Curation Databases Ontologies Intrinsically disordered proteins Protein sequence analysis Protein function analysis
Video

Annotating data using next generation biobanking ontology (NGBO)

• beginner
Data integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary
Video

Applying data standards to the harmonization of COVID-19 datasets from different sources

• beginner
Data integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies
Video

Data harmonization and enrichment using EMBL-EBI ontology tools

• beginner
Data management Data submission, annotation, and curation Ontology and terminology CINECA data harmonization Annotation Ontologies
Video

Solutions for overcoming cohort data integration challenges using ontology: an introduction

• beginner
Ontology and terminology Data integration and warehousing Data management Ontologies Data integration Annotation
Documentation

InterMine user manual

• beginner
Data querying data visualization Data download FAIR
e-learning

Biocuration: A curated set of EMBL-EBI online courses

Database management Ontology and terminology Natural language processing Programmatic access Programming Text mining Biocuration Biocurators User experience UX ELIXIR Converge
Tutorial

InterMine user tutorial

• beginner
Data querying Data analysis Data download FAIR
Mining enzyme data in UniProtKB using Rhea

• beginner
biochemistry data mining lipids ontology proteins and proteomes training alan bridge group
Video, Training materials, E-learning

Expanding the SPHN RDF Schema

• beginner
Ontology and terminology Medical informatics FAIR data Data management Computer science Editing Ontology visualisation Visualisation Data handling Clinical data Data semantics FAIR Ontology editing Protegé RDF OWL
Tutorial

OpenRiskNet: Ontology Walkthrough and Workshop

• beginner
Toxicology Ontology and terminology
Video, Training materials, Mock data, E-learning

RDF Schema and Data Visualization

• beginner
Data visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval Clinical data SPARQL Data visualization RDF Knowledge graph GraphDB Mock data
Video, Training materials, E-learning

Training Primer (RDF and SPARQL)

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology
Video, Training materials, E-learning

Semantic Standards

• beginner
Computer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR Standards Ontology SNOMED CT LOINC ATC CHOP ICD Interoperability
Recorded webinar

Improving data reproducibility for chemosensitivity assays using MICHA

Chemical biology
Video, Presentation

The essentials of DUO codes

Bioinformatics Genomics bioinformatics
Recorded webinar

Ontologies for biocuration
Webinar

Ontology Lookup Service (OLS)

Ontology and terminology
Training materials

Plant Phenotyping Data managment (MIAPPE)

• beginner
Phenomics Plant biology Data management Annotation Formatting Plant Phenotyping Data-format data sharing
lessons, e-learning

Introduction to Data Management Practices - Metadata

• beginner
Data management FAIR data data organisation FAIR CONVERGE ontologies metadata Controlled vocabularies
Recorded webinar

QuickGO: Gene ontology annotation

Ontology and terminology
Series of videos

Query Expansion services - tutorial

•• intermediate
Data management Data Query data Query expansion
Video

Making cohort data FAIR

• beginner
Data integration and warehousing Data management FAIR data Cohort data Ontologies Standards
Giving data context, structure and meaning

metadata Ontologies
Protein Sequence Databases and Sequence Annotation at UniProtKB

• beginner
alan bridge group database curation ontology proteins and proteomes training
Video, Slides

Plant Phenotyping Data managment Webinar (MIAPPE)

• beginner
Plant biology Phenomics Data quality management Data submission, annotation, and curation Standardisation and normalisation
Tutorial

Adding nanomaterial data

•• intermediate
Toxicology Database management ontologies enanomapper RDF