InterMine user tutorial

InterMine integrates biological data sources, making it easy to query and analyse data. It is a downloadable platform that operators can install and integrate with their own systems.

InterMine is a generic model-based platform that is used to provide data to end users in many different life science domains, such as synthetic biology and biomedical research. It is particularly popular with model organism projects.

This documentation is for users of an InterMine installation. Among other things, it describes how they can search for biological entities (gene, protein, pathway, etc.), run sophisticated queries over integrated data [an example might be useful], analyze query results and gene lists (gene ontology enrichment analysis, for example) and download or interact with data programmatically (e.g. by scripts written in Python, R and other languages).

For the InterMine user manual, please see http://flymine.readthedocs.io/en/latest. For user video tutorials of particular InterMine installations, please see http://intermine.org/tutorials

Keywords: Data querying, Data analysis, Data download, FAIR

Resource type: Tutorial

Target audience: Life Science Researchers, Bioinformaticians

Difficulty level: Beginner

Licence: Creative Commons Attribution 4.0

Authors: Rachel Lyne, Yo Yehudi, Julie Sullivan

DOI: https://doi.org/10.6084/m9.figshare.4737313.v4

External resources:

InterMineR

InterMine

InterMine user tutorial https://tess.elixir-europe.org/materials/intermine-user-tutorial A tutorial for end users of InterMine Data querying, Data analysis, Data download, FAIR Life Science Researchers Bioinformaticians