e-learning

Adding and updating best practice metadata for Galaxy tools using the bio.tools registry

Abstract

Galaxy offers thousands of tools. Many of these tools either have incomplete metadata or are not yet linked to sources of high-quality metadata such as bio.tools.

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Questions this will address

  • How are Galaxy tools linked to EDAM ontology?
  • How to connect Galaxy tools to bio.tools?
  • What is bio.tools?
  • How to add, and update, entries in bio.tools?

Learning Objectives

  • Identify Galaxy tools without bio.tools entry
  • Create a bio.tools entry
  • Update a bio.tools entry
  • Add EDAM ontology terms to a bio.tools entry
  • Link a Galaxy tool to its corresponding bio.tools entry

Licence: Creative Commons Attribution 4.0 International

Keywords: Development in Galaxy

Target audience: Galaxy Administrators

Resource type: e-learning

Version: 5

Status: Active

Learning objectives:

  • Identify Galaxy tools without bio.tools entry
  • Create a bio.tools entry
  • Update a bio.tools entry
  • Add EDAM ontology terms to a bio.tools entry
  • Link a Galaxy tool to its corresponding bio.tools entry

Date modified: 2024-11-06

Date published: 2024-03-06

Authors: Bérénice Batut, Johan Gustafsson, Paul Zierep

Contributors: Bérénice Batut, Helena Rasche, Johan Gustafsson, Paul Zierep, Saskia Hiltemann, Wendi Bacon

Scientific topics: Software engineering


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