Content Providers

  • ELIXIR Portugal

    ELIXIR Portugal is organized as a consortium of Portuguese research institutions which are part...

    18 training materials
    0 upcoming events (28 past events)
    ELIXIR Portugal https://tess.elixir-europe.org/content_providers/elixir-portugal ELIXIR Portugal is organized as a consortium of Portuguese research institutions which are part of the national biological information network, BioData.pt. Like ELIXIR itself, the Portuguese node is a decentralized network of specialized centers, under a common hardware and software infrastructure, and with shared training and industry/entrepreneurship programmes. /system/content_providers/images/000/000/068/original/PT-9f2611b1953f3109fa81668d960e7068390f4ef69be8f4b950ec0e8d7b106503.png?1487950711
  • Showing 18 materials.
    Ready For BioData Management?

    "Ready For BioData Management?" is BioData.pt/ELIXIR-Portugal's capacity building program in data management for the life sciences.

    Scientific topics: Data management

    Keywords: Data managment plan

    Resource type: course materials

    Ready For BioData Management? https://tess.elixir-europe.org/materials/ready-for-biodata-management "Ready For BioData Management?" is BioData.pt/ELIXIR-Portugal's capacity building program in data management for the life sciences. Marta Silva Data management Data managment plan Life Science Researchers PhD students Master students Technicians
    3DAROC18 - 3C-based data analysis and 3D reconstruction of chromatin folding (2018)

    Training Material focused in 3C-Data Analysis and 3D Chromatin Folding

    Keywords: Hi-C

    Resource type: Documentation, Exercise, Handout, Scripts

    3DAROC18 - 3C-based data analysis and 3D reconstruction of chromatin folding (2018) https://tess.elixir-europe.org/materials/3daroc18-3c-based-data-analysis-and-3d-reconstruction-of-chromatin-folding-2018 Training Material focused in 3C-Data Analysis and 3D Chromatin Folding Marc A. Martí-Renom François Serra David Castillo Hi-C Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    PSLS20 - Practical Statistics for the Life Sciences (2020)

    Training material that covers essential statistical concepts and methods for extracting insights from empirical data in the life sciences.

    Keywords: Statistics, General Linear Models

    Resource type: Documentation, Exercise, Handout, Scripts

    PSLS20 - Practical Statistics for the Life Sciences (2020) https://tess.elixir-europe.org/materials/psls20-practical-statistics-for-the-life-sciences-2020 Training material that covers essential statistical concepts and methods for extracting insights from empirical data in the life sciences. Lieven Clement Jeroen Gilis Statistics, General Linear Models Academia/ Research Institution Industry Healthcare Non-Profit Organisation
    PGDH18 - Population Genetics and Demographic History: model-based approaches (2018)

    Training material for hands-on course with a practical approach in the analysis of genetic and genomic data.

    Keywords: Population Genomics, Phylogenetics

    Resource type: Documentation, Exercise, Handout, Scripts

    PGDH18 - Population Genetics and Demographic History: model-based approaches (2018) https://tess.elixir-europe.org/materials/pgdh18-population-genetics-and-demographic-history-model-based-approaches-2018 Training material for hands-on course with a practical approach in the analysis of genetic and genomic data. Mark Beaumont Lounès Chikhi Willy Rodríguez Armando Arredondo Soto Vitor Sousa Population Genomics, Phylogenetics Academia/ Research Institution Industry Non-Profit Organisation
    ABSTAT18 - Advanced Biostatistics for Bioinformatics Tool Users using R (2018)

    Training Material centred in Biostatistical techniques often employed in analytical tools for high throughput data and multivariate data.

    Keywords: Statistics and probability

    Resource type: Documentation, Exercise, Handout, Scripts

    ABSTAT18 - Advanced Biostatistics for Bioinformatics Tool Users using R (2018) https://tess.elixir-europe.org/materials/abstat18-advanced-biostatistics-for-bioinformatics-tool-users-using-r-2018 Training Material centred in Biostatistical techniques often employed in analytical tools for high throughput data and multivariate data. Lisete Sousa Carina Silva Statistics and probability Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    PPB18 - Programming in Python for Biologists (2018)

    Training Material that covers the basic concepts of Python, such as calculation, organization of data, reading and writing files, program logic and writing larger programs. All the examples and exercises focus on solving biological problems.

    Operations: Data handling, Data retrieval

    Keywords: Bioinformatics, Biology, Biological databases

    Resource type: Documentation, Exercise, Handout, Scripts

    PPB18 - Programming in Python for Biologists (2018) https://tess.elixir-europe.org/materials/ppb18-programming-in-python-for-biologists-2018 Training Material that covers the basic concepts of Python, such as calculation, organization of data, reading and writing files, program logic and writing larger programs. All the examples and exercises focus on solving biological problems. Allegra Via Vincenza Colonna David Philip Judge Bioinformatics, Biology, Biological databases Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    ELB18F - Entry level Bioinformatics (First course in 2018)

    Training material for entry level course in bioinformatics with a soft introduction to NGS data analysis.

    Keywords: Bioinformatics, Sequencing

    Resource type: Documentation, Exercise, Handout, Scripts

    ELB18F - Entry level Bioinformatics (First course in 2018) https://tess.elixir-europe.org/materials/elb18f-entry-level-bioinformatics-first-course-in-2018 Training material for entry level course in bioinformatics with a soft introduction to NGS data analysis. David Philip Judge Daniel Sobral Pedro Fernandes Bioinformatics, Sequencing Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    ADER18F - Analysis of Differential Expression with RNAseq (First course in 2018)

    Training material for an introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq.

    Keywords: RNA-Seq, Genomics, RNA

    Resource type: Documentation, Exercise, Handout, Scripts

    ADER18F - Analysis of Differential Expression with RNAseq (First course in 2018) https://tess.elixir-europe.org/materials/ader18f-analysis-of-differential-expression-with-rnaseq-first-course-in-2018 Training material for an introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq. Daniel Sobral Daniel Faria Daniel Neves RNA-Seq, Genomics, RNA Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    ELB19F - Entry level Bioinformatics (First course in 2019)

    Training material for an entry-level course in bioinformatics with a soft introduction to NGS data analysis.

    Keywords: Bioinformatics, Sequencing

    Resource type: Documentation, Exercise, Handout, Scripts

    ELB19F - Entry level Bioinformatics (First course in 2019) https://tess.elixir-europe.org/materials/elb19f-entry-level-bioinformatics-first-course-in-2019 Training material for an entry-level course in bioinformatics with a soft introduction to NGS data analysis. David Philip Judge Daniel Sobral Pedro Fernandes Bioinformatics, Sequencing Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    PDA18 - Proteomics Data Analysis (2018)

    Training material that covers the concepts and methods of Mass spectrometry-based proteomic experiments, covering peptide and protein identification, quantification, and differential analysis.

    Keywords: Proteomics, Biological databases, Mass spectrometry data

    Resource type: Documentation, Exercise, Handout, Scripts

    PDA18 - Proteomics Data Analysis (2018) https://tess.elixir-europe.org/materials/pda18-proteomics-data-analysis-2018 Training material that covers the concepts and methods of Mass spectrometry-based proteomic experiments, covering peptide and protein identification, quantification, and differential analysis. Lennart Martens Harald Barsnes Lieven Clement Proteomics, Biological databases, Mass spectrometry data Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    CPANG18 - Computational PANGenomics (2018)

    Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.

    Keywords: Genomics

    Resource type: Documentation, Exercise, Handout, Scripts

    CPANG18 - Computational PANGenomics (2018) https://tess.elixir-europe.org/materials/cpang18-computational-pangenomics-2018 Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types. Erik Garrison Mikko Rautiainen Jordan Eizenga Genomics Academia/ Research Institution Industry Non-Profit Organisation
    ADER18S - Analysis of Differential Expression with RNAseq (Second course in 2018)

    Training material for introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq.

    Keywords: RNA-Seq, Genomics, RNA

    Resource type: Documentation, Exercise, Handout, Scripts

    ADER18S - Analysis of Differential Expression with RNAseq (Second course in 2018) https://tess.elixir-europe.org/materials/ader18s-analysis-of-differential-expression-with-rnaseq-second-course-in-2018 Training material for introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq. Daniel Sobral Daniel Faria Daniel Neves RNA-Seq, Genomics, RNA Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    ELBS18 - Entry level Bioinformatics (Second course in 2018)

    Training material for an entry-level course in bioinformatics with a soft introduction to NGS data analysis

    Keywords: Bioinformatics, Sequencing

    Resource type: Documentation, Exercise, Handout, Scripts

    ELBS18 - Entry level Bioinformatics (Second course in 2018) https://tess.elixir-europe.org/materials/elbs18-entry-level-bioinformatics-second-course-in-2018 Training material for an entry-level course in bioinformatics with a soft introduction to NGS data analysis David Philip Judge Daniel Sobral Pedro Fernandes Bioinformatics, Sequencing Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    PDA19 - Proteomics Data Analysis (2019)

    Training material that covers the concepts and methods of Mass spectrometry-based proteomic experiments, covering peptide and protein identification, quantification, and differential analysis.

    Keywords: Proteomics, Biological databases, Mass spectrometry data

    Resource type: Documentation, Exercise, Handout, Scripts

    PDA19 - Proteomics Data Analysis (2019) https://tess.elixir-europe.org/materials/pda19-proteomics-data-analysis-2019 Training material that covers the concepts and methods of Mass spectrometry-based proteomic experiments, covering peptide and protein identification, quantification, and differential analysis. Lennart Martens Harald Barsnes Lieven Clement Proteomics, Biological databases, Mass spectrometry data Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    PGDH19 - Population Genetics Demographic History: model-based approaches (2019)

    Training material for a hands-on course with a practical approach in the analysis of genetic and genomic data.

    Keywords: Population Genomics, Phylogenetics

    Resource type: Documentation, Exercise, Handout, Scripts

    PGDH19 - Population Genetics Demographic History: model-based approaches (2019) https://tess.elixir-europe.org/materials/pgdh19-population-genetics-demographic-history-model-based-approaches-2019 Training material for a hands-on course with a practical approach in the analysis of genetic and genomic data. Mark Beaumont Lounès Chikhi Willy Rodriguez Vitor Sousa Armando Arredondo Population Genomics, Phylogenetics Academia/ Research Institution Industry Non-Profit Organisation
    ADER19F - Analysis of Differential Expression with RNAseq (First course in 2019)

    Training material for an introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq.

    Keywords: RNA-Seq, Genomics, RNA

    Resource type: Documentation, Exercise, Handout, Scripts

    ADER19F - Analysis of Differential Expression with RNAseq (First course in 2019) https://tess.elixir-europe.org/materials/ader19f-analysis-of-differential-expression-with-rnaseq-first-course-in-2019 Training material for an introductory course that covers practical aspects of the analysis of differential gene expression by RNAseq. Daniel Sobral Daniel Faria Daniel Neves RNA-Seq, Genomics, RNA Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    CPANG19 - Computational PANGenomics (2019)

    Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types.

    Keywords: Genomics

    Resource type: Documentation, Exercise, Handout, Scripts

    CPANG19 - Computational PANGenomics (2019) https://tess.elixir-europe.org/materials/cpang19-computational-pangenomics-2019 Training Material aimed in the exploration of modern bioinformatic tools that allow researchers to use pangenomes as their reference system when engaging in studies of organisms of all types. Erik Garrison Mikko Rautiainen Genomics Academia/ Research Institution Industry Non-Profit Organisation Healthcare
    IBIP19 - Integrative Biological Interpretation using Proteomics (2019)

    Training Material aimed at researchers who are not expert in proteomics and want to integrate quantitative proteomics results into wider biomedical experiments.

    Keywords: Proteomics

    Resource type: Documentation, Exercise, Handout, Scripts

    IBIP19 - Integrative Biological Interpretation using Proteomics (2019) https://tess.elixir-europe.org/materials/ibip19-integrative-biological-interpretation-using-proteomics-2019 Training Material aimed at researchers who are not expert in proteomics and want to integrate quantitative proteomics results into wider biomedical experiments. David Bouyssié Veit Schwämmle Marc Vaudel Proteomics Academia/ Research Institution Industry Non-Profit Organisation Healthcare
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