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  • ELIXIR Portugal

    ELIXIR Portugal is organized as a consortium of Portuguese research institutions which are part...

    20 training materials
    1 upcoming event (43 past events)
    ELIXIR Portugal https://tess.elixir-europe.org/content_providers/elixir-portugal ELIXIR Portugal is organized as a consortium of Portuguese research institutions which are part of the national biological information network, BioData.pt. Like ELIXIR itself, the Portuguese node is a decentralized network of specialized centers, under a common hardware and software infrastructure, and with shared training and industry/entrepreneurship programmes. /system/content_providers/images/000/000/068/original/PT-9f2611b1953f3109fa81668d960e7068390f4ef69be8f4b950ec0e8d7b106503.png?1487950711
  • Showing 20 materials.
    Ready For BioData Management?

    "Ready For BioData Management?" is BioData.pt/ELIXIR-Portugal's capacity building program in data management for the life sciences.
    Under this program, we have organized an intro-level workshop on data management plans, the material for which is available.
    We are also organizing an advanced...

    Scientific topics: Data management

    Keywords: Data managment plan

    Resource type: course materials

    BioData.pt | ELIXIR PT Training Data Stewards for Life Sciences - Intro Course

    BioData.pt | ELIXIR Portugal, in collaboration with several other organizations has designed a program to train the first generation of Data Stewards for the life sciences, to support the implementation of data management, open science and FAIR data principles in Portuguese R&I organizations....

    Scientific topics: Data management, Open science, FAIR data

    Keywords: Data management plan, data-science, data-analysis, Data Integration, training, open science, data FAIRness, FAIR data, FAIR, FAIR principles, life sciences, data life cycle

    Resource type: Training materials

    PSLS20 - Practical Statistics for the Life Sciences (2020)

    This intermediate level course is one of our Foundations courses. It covers essential statistical concepts and methods for extracting insights from empirical data in the life sciences. The course positions applied statistics, starting from important aspects of experimental design and data...

    Keywords: Statistics, General Linear Models

    Resource type: Documentation, Exercise, Handout, Scripts

    3DAROC18 - 3C-based data analysis and 3D reconstruction of chromatin folding (2018)

    3C-based methods, such as Hi-C, produce a huge amount of raw data as pairs of DNA reads that are spatially close in the cell nucleus. Overall, these interaction matrices have been used to study how the genome folds within the nucleus, that is one of the most fascinating problems in modern...

    Keywords: Hi-C

    Resource type: Documentation, Exercise, Handout, Scripts

    PGDH18 - Population Genetics and Demographic History: model-based approaches (2018)

    Genetic and genomic data are increasingly used by ecologists and evolutionary biologists in general. It has thus become important for many biologists with different levels of experience to produce and analyse genetic (and genomic) data. In this course we will take a practical approach to the...

    Keywords: Population Genomics, Phylogenetics

    Resource type: Documentation, Exercise, Handout, Scripts

    ABSTAT18 - Advanced Biostatistics for Bioinformatics Tool Users using R (2018)

    This course is targeted for Biostatistical techniques often employed in analytical tools for high throughput data and multivariate data. Participants can expect to attend a thorough set of lectures that will reveal the conceptual frameworks that are needed to understand the methods. Extensive...

    Keywords: Statistics and probability

    Resource type: Documentation, Exercise, Handout, Scripts

    PPB18 - Programming in Python for Biologists (2018)

    Python is an object-oriented programming language that is ideal for biological data analysis. The course will start from zero knowledge, and will introduce the participants to all the basic concepts of Python such as calculating, organizing data, reading and writing files, program logic and...

    Operations: Data handling, Data retrieval

    Keywords: Bioinformatics, Biology, Biological databases

    Resource type: Documentation, Exercise, Handout, Scripts

    ELB18F - Entry level Bioinformatics (First course in 2018)

    This is an entry level course aimed that those with a reasonable biological background but no significant experience with bioinformatics. The course is broadly based around a series of exercises in which a combination of simple analytical tools and reference to publicly available databases is...

    Keywords: Bioinformatics, Sequencing

    Resource type: Documentation, Exercise, Handout, Scripts

    ADER18F - Analysis of Differential Expression with RNAseq (First course in 2018)

    This introductory course covers practical aspects of the analysis of differential gene expression by RNAseq, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. We we will also cover some of the initial...

    Keywords: RNA-Seq, Genomics, RNA

    Resource type: Documentation, Exercise, Handout, Scripts

    ELB19F - Entry level Bioinformatics (First course in 2019)

    This is an entry level course aimed that those with a reasonable biological background but no significant experience with bioinformatics. The course is broadly based around a series of exercises in which a combination of simple analytical tools and reference to publicly available databases is...

    Keywords: Bioinformatics, Sequencing

    Resource type: Documentation, Exercise, Handout, Scripts

    PDA18 - Proteomics Data Analysis (2018)

    Mass spectrometry based proteomic experiments generate ever larger datasets and, as a consequence, complex data interpretation challenges. In this course, the concepts and methods required to tackle these challenges will be introduced, covering peptide and protein identification, quantification,...

    Keywords: Proteomics, Biological databases, Mass spectrometry data

    Resource type: Documentation, Exercise, Handout, Scripts

    CPANG18 - Computational PANGenomics (2018)

    Reference genomes have become central to bioinformatics approaches, and form the core of standard analyses using contemporary sequencing data. However, the use of linear reference genomes, which provide the sequence of one representative genome for a species, is increasingly becoming a limitation...

    Keywords: Genomics

    Resource type: Documentation, Exercise, Handout, Scripts

    ADER18S - Analysis of Differential Expression with RNAseq (Second course in 2018)

    This introductory course covers practical aspects of the analysis of differential gene expression by RNAseq, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. For this edition of the course, we will also...

    Keywords: RNA-Seq, Genomics, RNA

    Resource type: Documentation, Exercise, Handout, Scripts

    ELBS18 - Entry level Bioinformatics (Second course in 2018)

    This is an entry level course aimed that those with a reasonable biological background but no significant experience with bioinformatics. The course is broadly based around a series of exercises in which a combination of simple analytical tools and reference to publicly available databases is...

    Keywords: Bioinformatics, Sequencing

    Resource type: Documentation, Exercise, Handout, Scripts

    PDA19 - Proteomics Data Analysis (2019)

    Mass spectrometry based proteomic experiments generate ever larger datasets and, as a consequence, complex data interpretation challenges. In this course, the concepts and methods required to tackle these challenges will be introduced, covering peptide and protein identification, quantification,...

    Keywords: Proteomics, Biological databases, Mass spectrometry data

    Resource type: Documentation, Exercise, Handout, Scripts

    PGDH19 - Population Genetics Demographic History: model-based approaches (2019)

    Genetic and genomic data are increasingly used by ecologists and evolutionary biologists in general. It has thus become important for many biologists with different levels of experience to produce and analyse genetic (and genomic) data. In this course we will take a practical approach to the...

    Keywords: Population Genomics, Phylogenetics

    Resource type: Documentation, Exercise, Handout, Scripts

    ADER19F - Analysis of Differential Expression with RNAseq (First course in 2019)

    This introductory course covers practical aspects of the analysis of differential gene expression by RNAseq, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. For this edition of the course, we will also...

    Keywords: RNA-Seq, Genomics, RNA

    Resource type: Documentation, Exercise, Handout, Scripts

    CPANG19 - Computational PANGenomics (2019)

    Reference genomes have become central to bioinformatics approaches, and form the core of standard analyses using contemporary sequencing data. However, the use of linear reference genomes, which provide the sequence of one representative genome for a species, is increasingly becoming a limitation...

    Keywords: Genomics

    Resource type: Documentation, Exercise, Handout, Scripts

    IBIP19 - Integrative Biological Interpretation using Proteomics (2019)

    Quantitative proteomics by mass spectrometry has become an essential tool for multi-omics studies aiming at answering important biological questions in a system-wide perspective. Proteomics data contain rich and deep information that can become challenging to extract, interpret, and interface...

    Keywords: Proteomics

    Resource type: Documentation, Exercise, Handout, Scripts

    PSLS22 Practical Statistics for the Life Sciences

    The concepts and methods are exclusively introduced via case-studies in the life sciences. For every study we elaborate on a concrete research question and then provide a study design, which is followed by data exploration. Next, we will focus on how to model the data and elaborate on the link...

    Showing 1 upcoming event. Found 43 past events. View all results.
    • PDA22 Proteomics Data Analysis

      12 - 16 September 2022

      Oeiras, Portugal

      Elixir node event