Tutorial

EMO-BON Metagenomics: From Backend Integration to Frontend Processing

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Minimal examples on how to generate a knowledge graph from set of RO-Crates, and use it as a SPARQL endpoint either directly or using python rdflib. The examples are constructed from EMO-BON long-term omics observatory for marine biodiversity.

DOI: https://doi.org/10.5281/zenodo.17805439

Licence: MIT License

Keywords: SPARQL, fuseki, Python

Target audience: Bioinformaticians, Data Managers

Resource type: Tutorial

Version: v1.0

Status: Active

Prerequisites:

basic python knowledge

Date created: 2025-11-17

Date modified: 2025-12-03

Date published: 2025-12-03

Authors: David Palecek

Contributors: Cymon Cox

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