Training materials
Tools: InterMineR or ORGANISMS or PLAZA monocots or PathVisio or SEEK or runBioSimulations or stringApp
-
Slides
Life Sciences Research Data Management 2023 Course by ELIXIR Norway
• beginnerData management Data submission, annotation, and curation Data handling Deposition Data retrieval -
Tutorial, hands-on tutorial
WikiPathways Academy
• beginnerBiology Systems biology Pathway WikiPathways Biocuration -
Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Training materials
PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics
•• intermediateGenotype and phenotype Phylogenomics Evolutionary biology Comparative genomics Functional genomics Plant biology Comparison Visualisation Annotation plants Plants bioinformatics genomics Visualisation Annotation -
Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR -
Documentation
InterMine user manual
• beginnerData querying data visualization Data download FAIR -
Documentation
InterMine operator manual
•• intermediateData integration Data analysis Data publishing FAIR -
Tutorial
#metawinterschool contribution by BiGCaT
• beginnerMetabolomics Identifiers ELIXIR RIR, BridgeDb -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation