Training materials
Tools: BridgeDb API or ChEBI or Galaxy or InterMineR or ORGANISMS or PhysiCell or ViralZone
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Ready for BioData Management? Intensive Course
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Tutorial, Presentation
Materials from 'Introduction to High Performance Computing for Life Scientists' course
•• intermediateComputational biology HPC GPU parallel computing -
e-learning
ViralZone: Studying viral diversity
• beginnerVirology Genomics Molecular biology virology -
e-learning
Retrieve and list information on SARS-CoV-2 from ViralZone
• beginnerVirology Molecular biology SARS-CoV-2 -
Video
Annotating data using ontologies
• beginnerData management Data integration and warehousing Ontology and terminology Ontologies Annotation Data integration -
Tutorial
InterMine user tutorial
• beginnerData querying Data analysis Data download FAIR -
Documentation
InterMine user manual
• beginnerData querying data visualization Data download FAIR -
Documentation
InterMine operator manual
•• intermediateData integration Data analysis Data publishing FAIR -
Tutorial, Vignette
BridgeDbR Tutorial
• beginnerELIXIR RIR, BridgeDb -
Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining