Training materials
Tools: BEDTools or Cufflinks or PLAZA monocots or SRA or WheatIS or runBioSimulations
-
Pan genomics tutorial using Minima2 and seq-seq-pan
• beginnerpan genomics genome alignment Minimap2 alignment seq-seq-pan R visualization genome alignment -
course materials, online course, Training materials
Cloud-SPAN Prenomics
• beginnerBioinformatics Software engineering Genomics Query and retrieval Data handling Cloud computing Shell Command line Amazon Web Services genomics HPC Data analysis bioinformatics -
Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Webinar, Slides, Video
WheatIS DataDiscovery webinar
• beginnerData management wheat information system data discovery -
Training materials
PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics
•• intermediateGenotype and phenotype Phylogenomics Evolutionary biology Comparative genomics Functional genomics Plant biology Comparison Visualisation Annotation plants Plants bioinformatics genomics Visualisation Annotation -
RNA-seq Analysis 2014 Module 4 - Isoform discovery and alternative expression