Training materials
Tools: BEDTools or BioSimulations or CARNIVAL or MGnify or ViralZone or runBioSimulations or stringApp
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Tutorial
From transcriptomics to mechanistic models of signalling
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e-learning
ViralZone: Studying viral diversity
• beginnerVirology Genomics Molecular biology virology -
Pan genomics tutorial using Minima2 and seq-seq-pan
• beginnerpan genomics genome alignment Minimap2 alignment seq-seq-pan R visualization genome alignment -
e-learning
Retrieve and list information on SARS-CoV-2 from ViralZone
• beginnerVirology Molecular biology SARS-CoV-2 -
Tutorial
Tutorial on CARNIVAL
•• intermediateMolecular interactions, pathways and networks Gene expression Omics RNA-Seq Network analysis RNA-Seq analysis HPC Signaling RNAseq, transcriptomics -
Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Tutorial
MGnify quick tour
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Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling Model Kinetic modeling SED-ML COMBINE -
Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation