Training materials
Tools: AlphaFold 2 or Data Information System (DAISY) or HumanMine or ORGANISMS or RStudio or V-pipe or ViralZone
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lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Introduction to RStudio
• beginnerData management FAIR data RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Scripted analysis with R
• beginnerData management FAIR data Bioinformatics Data visualisation RStudio CONVERGE ggPlot -
e-learning
ViralZone: Studying viral diversity
• beginnerVirology Genomics Molecular biology virology -
e-learning
Use V-pipe to evaluate SARS-CoV-2 sequence variability
• beginnerVirology Sequence analysis SARS-CoV-2 Variant calling -
e-learning
Retrieve and list information on SARS-CoV-2 from ViralZone
• beginnerVirology Molecular biology SARS-CoV-2 -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
Initiation to R programming and descriptive statistics
• beginnerR-programming Descriptive statistics Statistics Bioinformatics -
Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling -
Implementing GDPR in a Biomedical Research Institute
•• intermediateData governance Data management GDPR data protection sensitive data
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