Training materials
Related resources: Genome Annotation slides or Introduction to Galaxy dataset or Proteomics dataset or Slides | GPAP: the RD-Connect Genome-Phenome An... or Transcriptomics dataset or User Interface and Features dataset or seq-seq-pan
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Pan genomics tutorial using Minima2 and seq-seq-pan
• beginnerpan genomics genome alignment Minimap2 alignment seq-seq-pan R visualization genome alignment -
Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Tutorial
Transcriptomics - CLIP-Seq data analysis from pre-processing to motif detection
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Tutorial
User Interface and Features - Jupyter: Use Jupyter notebooks in Galaxy
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Tutorial
Genome Annotation - Genome annotation with Prokka
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Tutorial
Transcriptomics - Visualization of RNA-Seq results with CummeRbund
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Tutorial
Proteomics - Peptide and Protein ID using OpenMS tools
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Tutorial
Introduction to Galaxy Analyses - From peaks to genes
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Tutorial
Transcriptomics - Reference-based RNA-Seq data analysis
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Tutorial
Transcriptomics - Differential abundance testing of small RNAs
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