Training materials
Related resources: COBRA Toolbox or CanCOGeN or Chipster or Development in Galaxy slides or Epigenetics dataset or Introduction to the EGA and sharing sensitive data or MetaboLights
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Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Tutorial
Constraint-based reconstruction and analysis toolbox tutorials
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Slides, Training materials, Series of videos
Single-cell RNA-seq data analysis using Chipster 2022
• beginnerscRNA-seq -
Tutorial
Epigenetics - Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
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Tutorial
Development in Galaxy - Visualizations: generic plugins
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Tutorial
Development in Galaxy - Galaxy Webhooks
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Tutorial
Development in Galaxy - Visualizations: charts plugins
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Tutorial
Epigenetics - DNA Methylation data analysis