Training materials
Related resources: Associated slides or Chipster or HoloFood Project or Public Health Alliance for Genomic Epidemiology or Slides | GPAP: the RD-Connect Genome-Phenome An... or Variant Analysis dataset
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Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Slides, Training materials, Series of videos
Single-cell RNA-seq data analysis using Chipster 2022
• beginnerscRNA-seq -
Tutorial
Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
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Tutorial
Variant Analysis - Microbial Variant Calling
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Tutorial
Variant Analysis - Calling variants in non-diploid systems
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Tutorial
Assembly - Unicycler Assembly
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Tutorial
Transcriptomics - Visualization of RNA-Seq results with CummeRbund
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Tutorial
Development in Galaxy - Visualizations: generic plugins
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