Training materials
Related resources: Assembly dataset or CanCOGeN or Introduction to Galaxy dataset or Introduction to the EGA and sharing sensitive data or MGnify or Ready For BioData Management? or User Interface and Features dataset
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Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Training materials
Plant Phenotyping Data managment (MIAPPE)
• beginnerPhenomics Plant biology Data management Annotation Formatting Plant Phenotyping Data-format data sharing -
Tutorial
User Interface and Features - Jupyter: Use Jupyter notebooks in Galaxy
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Tutorial
Assembly - Making sense of a newly assembled genome
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Tutorial
Assembly - Unicycler Assembly
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Tutorial
Assembly - De Bruijn Graph Assembly
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Tutorial
Assembly - Introduction to Genome Assembly
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Tutorial
Introduction to Galaxy Analyses - From peaks to genes