Training materials
Related resources: ARROWSMITH or Chipster or Epigenetics dataset or GEEM or Next generation biobanking ontology (NGBO) or Sequence analysis slides or Transcriptomics slides or Workshop FAIR & Data stewardship for the 2020 I...
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Slidedeck
Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle
• beginnerData management FAIR data Data handling Analysis Data analysis Data management planning Data processing Data sharing Data collection Data preserving Data reuse -
Video
Annotating data using next generation biobanking ontology (NGBO)
• beginnerData integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary -
Video
Annotating data using ontologies
• beginnerData management Data integration and warehousing Ontology and terminology Ontologies Annotation Data integration -
Slides, Training materials, Series of videos
Single-cell RNA-seq data analysis using Chipster 2022
• beginnerscRNA-seq -
Tutorial
Epigenetics - Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
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Text-mining exercises
•• intermediateMicrobial ecology Metagenomics Natural language processing Data mining -
Tutorial
Transcriptomics - Visualization of RNA-Seq results with CummeRbund
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Tutorial
Epigenetics - DNA Methylation data analysis
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Tutorial
Sequence analysis - Mapping
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Tutorial
Sequence analysis - Quality Control