Training materials
Resource type: hands-on tutorial
and Keywords: Data analysis or Pathway or RAD-seq or Statistical-model or collections or covid19
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hands-on tutorial
Multisample Analysis
••• advancedUsing Galaxy and Managing your Data collections -
hands-on tutorial
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• beginnerSequence analysis covid19 gmod jbrowse1 -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse -
hands-on tutorial
Reference-based RNA-Seq data analysis
• beginnerTranscriptomics QC bulk collections cyoa drosophila rna-seq -
hands-on tutorial
Rule Based Uploader: Advanced
••• advancedUsing Galaxy and Managing your Data collections tags -
hands-on tutorial
Automating Galaxy workflows using the command line
• beginnerUsing Galaxy and Managing your Data covid19 variant-analysis workflows
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