Training materials
Difficulty level: Intermediate
and Scientific topics: FAIR data or Phylogenetics or Proteomics or R markdown or Structure prediction or Toxicology
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hands-on tutorial
AlphaFold and friends on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction AlphaFold Database (13181) -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
slides, R Shiny application
Proteomics Data Analysis (PDA)
•• intermediateProteomics proteomics quantitative proteomics -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
hands-on tutorial
Hands-on for 'metaQuantome 3: Taxonomy' tutorial
•• intermediateproteomics microbiome -
hands-on tutorial
Hands-on for 'Secretome Prediction' tutorial
•• intermediateproteomics human -
hands-on tutorial
Hands-on for 'Proteogenomics 1: Database Creation' tutorial
•• intermediateproteomics proteogenomics -
hands-on tutorial
Hands-on for 'Proteogenomics 2: Database Search' tutorial
•• intermediateproteomics proteogenomics -
hands-on tutorial
Peptide Library Data Analysis
•• intermediateProteomics -
hands-on tutorial
Hands-on for 'metaQuantome 2: Function' tutorial
•• intermediateproteomics microbiome