Training materials
Contributors: Gildas Le Corguillé or John "Scooter" Morris or Michael Ball or Pavankumar Videm or PhD BSc FSB or Prof. Tom Freeman or UC Davis Bioinformatics Core Training Page
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hands-on tutorial
Hands-on for 'Whole transcriptome analysis of Arabidopsis thaliana' tutorial
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hands-on tutorial
Hands-on for 'De novo transcriptome assembly, annotation, and differential expression analysis' tutorial
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hands-on tutorial
Hands-on for 'Analysis of plant scRNA-Seq Data with Scanpy' tutorial
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hands-on tutorial
Hands-on for 'Small Non-coding RNA Clustering using BlockClust' tutorial
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hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnertranscriptomics bulk rna-seq collections drosophila QC cyoa -
hands-on tutorial
Mass spectrometry: LC-MS preprocessing with XCMS
•• intermediateMetabolomics -
hands-on tutorial
Hands-on for 'Mass spectrometry: LC-MS analysis' tutorial
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slides
Slides for 'Tool development and integration into Galaxy' tutorial
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slides
Introduction to 'Metabolomics'
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Cytoscape stringApp exercises
•• intermediateBioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation