hands-on tutorial

Hands-on for 'Analysis of plant scRNA-Seq Data with Scanpy' tutorial

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The questions this addresses are:
- Can we reclaim cell markers using a different analysis method?
- Are highly variable genes paramount to the analysis?

The objectives are:
- Perform filtering, dimensionality reduction, and clustering
- Generate a DotPlot emulating the original paper using a different analysis tool
- Determine robust clusters across scRNA-seq pipelines

Licence: Creative Commons Attribution 4.0 International

Keywords: single-cell, single-cell, plants, paper-replication

Target audience: Students

Resource type: hands-on tutorial

Authors: Beatriz Serrano-Solano, Cristóbal Gallardo, Mehmet Tekman, Pavankumar Videm

Contributors: Beatriz Serrano-Solano, Cristóbal Gallardo, Mehmet Tekman, Pavankumar Videm

Scientific topics: Transcriptomics

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