Training materials
Contributors: Dr. Alexander Lex or Dr. Jim Procter or John Chilton or Jyoti Khadake or Mattias Strömberg or Michael Ball or Nicola Soranzo or Praveen Kumar or Sonika Tyagi or The Carpentries or Vicky Schneider
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hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Introduction to RStudio
• beginnerData management FAIR data RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Scripted analysis with R
• beginnerData management FAIR data Bioinformatics Data visualisation RStudio CONVERGE ggPlot -
lessons, e-learning
Introduction to Data Management Practices - Cleaning tabular data with OpenRefine
• beginnerData management Open science FAIR data FAIR CONVERGE -
lessons, e-learning
Introduction to Data Management Practices - Metadata
• beginnerData management FAIR data data organisation FAIR CONVERGE ontologies metadata Controlled vocabularies -
lessons, e-learning
Introduction to Data Management Practices - Data organisation practices
• beginnerData management FAIR data data organisation FAIR CONVERGE -
lessons, e-learning
Introduction to Data Management Practices - Open Science and FAIR
• beginnerData management Open science FAIR data FAIR CONVERGE -
hands-on tutorial
Live Coding is a Skill
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis