Training materials
Scientific topics: Software engineering or Transcriptomics
and Contributors: Celia van Gelder or Dr. Sean I O’Donoghue or Mehmet Tekman or Michael Krone or Pavel Dvorak or Prof. Tom Freeman or SIB Swiss Institute of Bioinformatics or Stephan Nylinder
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sib-swiss/spatial-transcriptomics-training
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sib-swiss/RNAseq-introduction-training
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sib-swiss/single-cell-training
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lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Pre-processing of Single-Cell RNA Data
• beginnerTranscriptomics Single Cell -
hands-on tutorial
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants -
hands-on tutorial
Downstream Single-cell RNA analysis with RaceID
• beginnerTranscriptomics Single Cell
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