Training materials
Difficulty level: Beginner
and Contributors: Björn Grüning or ELIXIR-CONVERGE WP2 members or Michael Parkin or Nate Coraor or Sabine Österle or Stéphanie Robin
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Video
ELIXIR-CONVERGE - The why of research data management
• beginnerData management FAIR data Data submission, annotation, and curation Data security Data integration and warehousing Data Life Cycle Data Steward Data Data access management Data management plan Data managment plan Data handling ELIXIR-CONVERGE -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Label-free versus Labelled - How to Choose Your Quantitation Method' tutorial
• beginnerproteomics DDA -
hands-on tutorial
Hands-on for 'Peptide and Protein ID using SearchGUI and PeptideShaker' tutorial
• beginnerproteomics DDA HeLa -
hands-on tutorial
Hands-on for 'Protein FASTA Database Handling' tutorial
• beginnerproteomics DDA -
hands-on tutorial
Hands-on for 'Mass spectrometry imaging: Loading and exploring MSI data' tutorial
• beginnerproteomics mouse imaging -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses
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