hands-on tutorial

Mass spectrometry imaging: Loading and exploring MSI data

The questions this addresses are:
- Did the tryptic digestions work?
- Is there an intensity gradient in the data?
- How good is the m/z accuracy?

The objectives are:
- How to upload an imzML file into Galaxy
- Getting an overview of the MSI data with the MSI quality control tool
- How to export MSI data as tabular files

Licence: Creative Commons Attribution 4.0 International

Keywords: Proteomics, imaging, mouse

Target audience: Students

Resource type: hands-on tutorial

Version: 17

Status: Active

Prerequisites:

Introduction to Galaxy Analyses

Learning objectives:

How to upload an imzML file into Galaxy
- Getting an overview of the MSI data with the MSI quality control tool
- How to export MSI data as tabular files

Date modified: 2023-11-09

Date published: 2018-11-27

Authors: Björn Grüning, Melanie Föll

Contributors: Björn Grüning, Melanie Föll

Scientific topics: Proteomics


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