Training materials
Target audience: Students
and Contributors: Belinda Phipson or Daniel Neves or Dr. Scooter Morris or Hadley Wickham or NBIS - National Bioinformatics Infrastructure S... or The Carpentries or Yvan Le Bras
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hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Champs blocs indicators
• beginnerEcology -
hands-on tutorial
Hands-on for 'Visualize EBV cube data with Panoply netCDF viewer' tutorial
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hands-on tutorial
Hands-on for 'Cleaning GBIF data for the use in Ecology' tutorial
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hands-on tutorial
3: RNA-seq genes to pathways
• beginnerTranscriptomics mouse -
hands-on tutorial
2: RNA-seq counts to genes
• beginnerTranscriptomics QC limma-voom mouse -
hands-on tutorial
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse -
hands-on tutorial
Variant Calling Workflow
• beginnerSoftware engineering Foundations of Data Science -
hands-on tutorial
SQL with Python
•• intermediateSoftware engineering Foundations of Data Science Python SQL jupyter-notebook -
hands-on tutorial
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook