Training materials
and Contributors: Bazante Sanders or Emily Angiolini or Ms. Sejal Modha or Prof. Michael J E Sternberg or Prof. Rod Page or Prof. Tom Freeman or SIB Swiss Institute of Bioinformatics or Simon Gladman
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hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
hands-on tutorial
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
hands-on tutorial
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
Introduction to SQL
• beginnerSoftware engineering Foundations of Data Science SQL jupyter-notebook -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly -
slides
Unicycler Assembly
• beginnerSequence assembly Assembly prokaryote -
slides
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
slides
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly