slides

De Bruijn Graph Assembly

Abstract

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Questions this will address

  • What are the factors that affect genome assembly?
  • How does Genome assembly work?

Learning Objectives

  • Perform an optimised Velvet assembly with the Velvet Optimiser
  • Compare this assembly with those we did in the basic tutorial
  • Perform an assembly using the SPAdes assembler.

Licence: Creative Commons Attribution 4.0 International

Keywords: Assembly

Target audience: Students

Resource type: slides

Version: 9

Status: Active

Prerequisites:

  • Introduction to Galaxy Analyses
  • Quality Control

Learning objectives:

  • Perform an optimised Velvet assembly with the Velvet Optimiser
  • Compare this assembly with those we did in the basic tutorial
  • Perform an assembly using the SPAdes assembler.

Date modified: 2022-02-07

Date published: 2017-05-24

Authors: Simon Gladman

Contributors: Anne Fouilloux, Bérénice Batut, Cristóbal Gallardo, Helena Rasche, Niall Beard, Nicola Soranzo, Saskia Hiltemann, Yvan Le Bras

Scientific topics: Sequence assembly


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