Training materials
Scientific topics: Software engineering
and Contributors: Bazante Sanders or Branka Franicevic or Jean-François Dufayard or Mark Beaumont or Mattias Strömberg or University of York
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lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
course materials, online course, Training materials
Cloud-SPAN Prenomics
• beginnerBioinformatics Software engineering Genomics Query and retrieval Data handling Cloud computing Shell Command line Amazon Web Services genomics HPC Data analysis bioinformatics -
hands-on tutorial
Hands-on for 'Python - Subprocess' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Globbing' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Python - Argparse
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Hands-on for 'Python - Try & Except' tutorial
• beginnerdata-science jupyter-notebook -
hands-on tutorial
Make & Snakemake
•• intermediateSoftware engineering Foundations of Data Science -
hands-on tutorial
Hands-on for 'Python - Files & CSV' tutorial
• beginnerdata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Flow Control' tutorial
• beginnerdata-science jupyter-notebook
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