Training materials
Difficulty level: Beginner
and Contributors: Bang Wong or Bazante Sanders or Björn Grüning or Celia van Gelder or Cyril Pommier or Eija Korpelainen or Eivind Coward or Emily Angiolini or Jamie Edwards or Markus Englund or Munazah Andrabi
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Sequence data submission to ENA
• beginnerENA FAIR FAIR Data, Workflows, and Research -
tutorial
TeSS, how can I help you?
• beginnerFAIR OPEN Bioinformatics Teaching TeSS -
lessons, e-learning
Introduction to Data Management Practices - Data Management Plans
• beginnerData management FAIR data Open science CONVERGE Data Stewardship Wizard Data management plan -
lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
lessons, e-learning
Introduction to Data Management Practices - Cleaning tabular data with OpenRefine
• beginnerData management Open science FAIR data FAIR CONVERGE -
lessons, e-learning
Introduction to Data Management Practices - Data publication
• beginnerData management Open science FAIR data FAIR CONVERGE -
lessons, e-learning
Introduction to Data Management Practices - Metadata
• beginnerData management FAIR data data organisation FAIR CONVERGE ontologies metadata Controlled vocabularies -
lessons, e-learning
Introduction to Data Management Practices - Data organisation practices
• beginnerData management FAIR data data organisation FAIR CONVERGE -
lessons, e-learning
Introduction to Data Management Practices - Open Science and FAIR
• beginnerData management Open science FAIR data FAIR CONVERGE