Training materials
Difficulty level: Beginner
and Contributors: Bang Wong or Bérénice Batut or Celia van Gelder or Erwan Corre or Michael Ball or Prof. Richard Baldock or Software Sustainability Institute or Vicky Schneider
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course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
course materials, online course, Training materials
Cloud-SPAN Prenomics
• beginnerBioinformatics Software engineering Genomics Query and retrieval Data handling Cloud computing Shell Command line Amazon Web Services genomics HPC Data analysis bioinformatics -
hands-on tutorial
Upload data to Galaxy
• beginnerIntroduction to Galaxy Analyses -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnertranscriptomics bulk rna-seq collections drosophila QC cyoa -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
Hands-on for 'Metatranscriptomics analysis using microbiome RNA-seq data (short)' tutorial
• beginnerMetagenomics metagenomics metatranscriptomics -
hands-on tutorial
From peaks to genes
• beginnerIntroduction to Galaxy Analyses -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly
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