Training materials
Difficulty level: Beginner
and Contributors: Avans Hogeschool or Erik van Nimwegen or Roland Krause or Software Sustainability Institute
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course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
e-learning
ISMARA: A tool to infer genome-wide regulatory interactions
• beginnerSystems biology Gene regulation Transcription factors and regulatory sites Computational modelling -
course materials, online course, Training materials
Cloud-SPAN Prenomics
• beginnerBioinformatics Software engineering Genomics Query and retrieval Data handling Cloud computing Shell Command line Amazon Web Services genomics HPC Data analysis bioinformatics -
hands-on tutorial
Hands-on for 'CLI basics' tutorial
• beginnerdata-science bash jupyter-notebook -
hands-on tutorial
Hands-on for 'Advanced SQL' tutorial
• beginnerdata-science SQL jupyter-notebook -
hands-on tutorial
Hands-on for 'Introduction to SQL' tutorial
• beginnerdata-science SQL jupyter-notebook -
Presentation
Data publishing and archival
• beginnerData publishing data archiving Data preserving -
Presentation
Practicalities of data handling
• beginnerData security Data acquisition Data management Data handling data encryption data protection setup checksums Data transfer Data storage data organisation -
Presentation
Introduction to FAIR principles
• beginnerFAIR data