Training materials
Contributors: Avans Hogeschool or Clair Castle or Cristóbal Gallardo or Emily Angiolini or Erasmus+ Programme or Mr. William Edward Hill or Pavel Dvorak or Prof. Tom Freeman
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hands-on tutorial
Refining Genome Annotations with Apollo (eukaryotes)
•• intermediateGenome Annotation apollo2 cyoa eukaryote gmod jbrowse1 -
hands-on tutorial
Genomic Data Visualisation with JBrowse
• beginnerVisualisation gmod jbrowse1 -
hands-on tutorial
Visualisation with Circos
• beginnerVisualisation -
hands-on tutorial
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
VGP assembly pipeline: Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Genome assembly using PacBio data
•• intermediateSequence assembly Assembly assembly pacbio -
hands-on tutorial
VGP assembly pipeline - short version
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
hands-on tutorial
Hands-on for 'Whole transcriptome analysis of Arabidopsis thaliana' tutorial
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hands-on tutorial
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerTranscriptomics Single Cell paper-replication plants