Training materials
Contributors: Anup Kumar or Bilal Shaikh or Dannon Baker or Erwan Corre or Matthias Fahrner or Michael Parkin or Pavankumar Videm or Timothy J. Griffin
-
hands-on tutorial
Hands-on for 'Pre-processing of 10X Single-Cell ATAC-seq Datasets' tutorial
-
hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateassembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
JavaScript plugins
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Hands-on for 'Genome assembly using PacBio data' tutorial
•• intermediateassembly pacbio -
hands-on tutorial
RNA-RNA interactome data analysis
• beginnerTranscriptomics -
hands-on tutorial
Hands-on for 'Whole transcriptome analysis of Arabidopsis thaliana' tutorial
-
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
Hands-on for 'Analysis of plant scRNA-Seq Data with Scanpy' tutorial