Training materials
Difficulty level: Beginner
and Contributors: Anthony Bretaudeau or Bang Wong or Björn Grüning or Celia van Gelder or Cyril Pommier or Eija Korpelainen or Eivind Coward or Emily Angiolini or Erik van Nimwegen or Jamie Edwards
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e-learning
ISMARA: A tool to infer genome-wide regulatory interactions
• beginnerSystems biology Gene regulation Transcription factors and regulatory sites Computational modelling -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Label-free versus Labelled - How to Choose Your Quantitation Method' tutorial
• beginnerproteomics DDA -
hands-on tutorial
Hands-on for 'Peptide and Protein ID using SearchGUI and PeptideShaker' tutorial
• beginnerproteomics DDA HeLa -
hands-on tutorial
Hands-on for 'Protein FASTA Database Handling' tutorial
• beginnerproteomics DDA -
hands-on tutorial
Hands-on for 'Mass spectrometry imaging: Loading and exploring MSI data' tutorial
• beginnerproteomics mouse imaging -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
From peaks to genes
• beginnerIntroduction to Galaxy Analyses -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly
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