Training materials
Difficulty level: Beginner
and Contributors: Anne Pajon or Barbara Kozlikova or Emma Leith or Erwan Corre or Maria Doyle or Thomas Denecker
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
CRISPR screen analysis
• beginnerCRISPR Genome Annotation cell line essential genes genome editing -
hands-on tutorial
Masking repeats with RepeatMasker
• beginnerGenome Annotation eukaryote -
hands-on tutorial
ATAC-Seq data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
Visualization of RNA-Seq results with Volcano Plot
• beginnerTranscriptomics -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics -
hands-on tutorial
3: RNA-seq genes to pathways
• beginnerTranscriptomics mouse -
hands-on tutorial
GO Enrichment Analysis
• beginnerTranscriptomics -
hands-on tutorial
2: RNA-seq counts to genes
• beginnerTranscriptomics QC limma-voom mouse -
hands-on tutorial
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse