Training materials
Difficulty level: Intermediate
and Contributors: Alvaro Gonzalez or Armando Arredondo Soto or Daniel Faria or Emma Leith or Enis Afgan or Tharindu Senapathi or Vasundra Touré
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hands-on tutorial
metaQuantome 3: Taxonomy
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy microgalaxy -
hands-on tutorial
metaQuantome 2: Function
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics microgalaxy -
hands-on tutorial
metaQuantome 1: Data creation
•• intermediateProteomics Proteogenomics Biodiversity Taxonomy microgalaxy -
hands-on tutorial
Galaxy Installation on Kubernetes
•• intermediateGalaxy Server administration kubernetes -
hands-on tutorial
Managing Galaxy on Kubernetes
•• intermediateGalaxy Server administration kubernetes -
hands-on tutorial
Analysis of molecular dynamics simulations
•• intermediateComputational chemistry -
hands-on tutorial
Running molecular dynamics simulations using NAMD
•• intermediateComputational chemistry -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design data access federated data analysis
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